View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5539_low_18 (Length: 363)
Name: NF5539_low_18
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 3 - 358
Target Start/End: Original strand, 7534133 - 7534488
Alignment:
| Q |
3 |
gatctcgaagaatatgagcagctcttctatactcccgacaatcaaagtaactcttggccaaaagataaaaatcaccatcaacaaattcatcctcttccat |
102 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7534133 |
gatcacgaagaacatgagcagctcttctatactcccgacaatcaaagtaactcttagccaaaagataaaaatcaccatcaacaaattcatcctcttccat |
7534232 |
T |
|
| Q |
103 |
aaccggagtagccacatacgaaacaccggcaatcggtgttgtcgtcggtgtaatctcatgtgttcggtactttcgtcgaatacttgaactacctctctga |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7534233 |
aaccggagtagccacatacgaaacaccggcaatcggtgttgtcgtcggtgtaatctcatgtgttcggtactttcgtcgaatacttgaactacctctctga |
7534332 |
T |
|
| Q |
203 |
aacctcgtatttgatggagtaaacttcgatggatcttgctctattcctaccaattgctctgctgccctgcattaaggaaggagaatgaaaatgaaatggt |
302 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7534333 |
aacctcgtatttgatggagtgaacttcgatggatcttgctctattcctaccaattgctctgctgccctgcattaaggaaggagaatgaaaatgagatggt |
7534432 |
T |
|
| Q |
303 |
gagagtgtgttgtgatgagctttatagcactgacacctctgatacaagacgtatgt |
358 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
7534433 |
gagagtgtgttgtgatgagctctatagcactgacacctctgatagcagacgtatgt |
7534488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 3 - 275
Target Start/End: Original strand, 46964715 - 46964987
Alignment:
| Q |
3 |
gatctcgaagaatatgagcagctcttctatactcccgacaatcaaagtaactcttggccaaaagataaaaatcaccatcaacaaattcatcctcttccat |
102 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||| || |||||||| ||| ||| |||||||||||||||||||||||||||| |||||| || ||||| |
|
|
| T |
46964715 |
gatcacgaagaacatgagcagctctcttatactcacggcaatcaaaataagacttcgccaaaagataaaaatcaccatcaacaacttcatcttcctccat |
46964814 |
T |
|
| Q |
103 |
aaccggagtagccacatacgaaacaccggcaatcggtgttgtcgtcggtgtaatctcatgtgttcggtactttcgtcgaatacttgaactacctctctga |
202 |
Q |
| |
|
|||||||||||| | |||||||||||| | |||||| |||||| | |||||||||||| || |||||||| || |||||||||||||| || | |||| |
|
|
| T |
46964815 |
aaccggagtagcaatatacgaaacacctgtaatcggcgttgtcat---tgtaatctcatgagtacggtacttccgacgaatacttgaacttccacgctga |
46964911 |
T |
|
| Q |
203 |
aacctcgtatttgatggagtaaacttcgatggatcttgc---tctattcctaccaattgctctgctgccctgcatt |
275 |
Q |
| |
|
||||||||||| || || || || || |||||||||||| || ||||||||||||||||| || |||||||||| |
|
|
| T |
46964912 |
aacctcgtattcgaaggcgtgaatttggatggatcttgcacttcgattcctaccaattgctccgccgccctgcatt |
46964987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University