View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_low_2 (Length: 764)
Name: NF5539_low_2
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_2 |
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| [»] scaffold0436 (4 HSPs) |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0436 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: scaffold0436
Description:
Target: scaffold0436; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 381 - 764
Target Start/End: Original strand, 4997 - 5380
Alignment:
| Q |
381 |
ctaagtacattgttttccttaagaaactcaacaattgtcattgatttgcacaatggaattctttttgtcttctttgttgcactttgctgactctccactg |
480 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4997 |
ctaagtacattgttttccttaagaaactcaacaattgtcgttgatttgcacaatggaattctttttgtcttctttgttgcactttgctgactctccattg |
5096 |
T |
|
| Q |
481 |
cctcatcgtcttcatcccccacccgnnnnnnnggattatctcttgttcctaagttgtcattttcagcataagtaattttcatgggtgactcaacttcttc |
580 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5097 |
cctcatcgtcttcatcccccacccatttttttggattctctcttgttcctaagttgtcattttcagcataagtaattttcatgggtgactcaacttcttc |
5196 |
T |
|
| Q |
581 |
aagaactacctttctcacaggttgtttatttggatgttgattctgcacaaatcctttggtttgagtcataaggttgcctcttggatcttgattttgtttg |
680 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5197 |
aagaactacctttctcgcaggttgtttatttggatgttgattctgcacaaatcctttggtttgagtcataaggttgcctcttggatcttgattttgtttg |
5296 |
T |
|
| Q |
681 |
gacccttggtttttagccaccaatgcttcattcgcgactctcttgggattaaacatctcttttttctgcagcgatcctttgctt |
764 |
Q |
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|| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5297 |
gatccttggtttttagtcaccaatgcttcattcgtgactctcttgggattaaacatctcttttttctgcagggatcctttgctt |
5380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0436; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 1967 - 2124
Alignment:
| Q |
112 |
agccaaagccagataatccgtggccaaagccttacaccacggtttggccaccctttttcaagtgtggtctatgcgcccgtggcctatttcctatggccac |
211 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1967 |
agccaaagccagaaaatccgtggccaaagccttacaccacggtttggccattatttttcaagtgtggtctatgcgcccgtggcctattccctatggccac |
2066 |
T |
|
| Q |
212 |
ggattttttcctttgcccacgaaattgtagcaaccgtggcttcaggtactacaatagg |
269 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2067 |
ggattgtttcctttgcccacgaaattgtagcaaccgtggcttcaggtactacattagg |
2124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0436; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 631 - 743
Target Start/End: Original strand, 5370 - 5482
Alignment:
| Q |
631 |
atcctttggtttgagtcataaggttgcctcttggatcttgattttgtttggacccttggtttttagccaccaatgcttcattcgcgactctcttgggatt |
730 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||| |||||| | ||| | |||||||||| ||| |||||||||| | |||| |||||| || |
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| T |
5370 |
atcctttgctttgagtgataaggttgcctcttggatcttggttttgtcttgactcatggtttttagtcactgatgcttcatttgtgactttcttggcatc |
5469 |
T |
|
| Q |
731 |
aaacatctctttt |
743 |
Q |
| |
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||| |||||||| |
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| T |
5470 |
aaatttctctttt |
5482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0436; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 4887 - 4921
Alignment:
| Q |
271 |
ttgttttcacattaccattattttcaccatcttcc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
4887 |
ttgttttcacattaccattattttcaccatcttcc |
4921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219 (Bit Score: 175; Significance: 8e-94; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 71 - 269
Target Start/End: Complemental strand, 4797 - 4599
Alignment:
| Q |
71 |
actacaacatttttgaacttagaccatacttcaaaaaccgtagccaaagccagataatccgtggccaaagccttacaccacggtttggccaccctttttc |
170 |
Q |
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|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
4797 |
actacaacatttttaaacttagaccatacttcaaaacccgtagccaaagccagataatccgtggccaaagccttgcaccacggtttggccactctttttc |
4698 |
T |
|
| Q |
171 |
aagtgtggtctatgcgcccgtggcctatttcctatggccacggattttttcctttgcccacgaaattgtagcaaccgtggcttcaggtactacaatagg |
269 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4697 |
aagtgtcgtctatgcgcccgtggcctatttcctatggccatggattttttcctttgcccacgaaattgtagcaaccgtggcttcaggtactacaatagg |
4599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 1e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 71 - 267
Target Start/End: Original strand, 31900690 - 31900886
Alignment:
| Q |
71 |
actacaacatttttgaacttagaccatacttcaaaaaccgtagccaaagccagataatccgtggccaaagccttacaccacggtttggccaccctttttc |
170 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||| |||| |||||||||||| |||||| |
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| T |
31900690 |
actacaacatttttaaacttagaccatacttcaaaaagcgtagccaaagccagaaaatctgtggccaaagccttaaaccatggtttggccaccatttttc |
31900789 |
T |
|
| Q |
171 |
aagtgtggtctatgcgcccgtggcctatttcctatggccacggattttttcctttgcccacgaaattgtagcaaccgtggcttcaggtactacaata |
267 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31900790 |
aagtgtggtctatgcgccctaggcctattccctatggccaaggattttttcctttgcccacgaaattgtagcaaccgtggcttcaggtactacaata |
31900886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 72 - 252
Target Start/End: Complemental strand, 19273301 - 19273122
Alignment:
| Q |
72 |
ctacaacatttttgaacttagaccatacttcaaaaaccgtagccaaagccagataatccgtggccaaagccttacaccacggtttggccaccctttttca |
171 |
Q |
| |
|
||||||||||||||||||||| ||| |||| ||||| ||||||||||||||| || |||||||||||| ||||||||||| |||| |||| |||| || |
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| T |
19273301 |
ctacaacatttttgaacttaggccagactttaaaaagtgtagccaaagccagaatattcgtggccaaagctttacaccacggattgggcaccgttttcca |
19273202 |
T |
|
| Q |
172 |
agtgtggtctatgcgcccgtggcctatttcctatggccacggattttttcctttgcccacgaaattgtagcaaccgtggct |
252 |
Q |
| |
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|||||||| ||||||||||||||| ||| | |||||||||||||| |||||||||| ||||| ||||||| |||||||||| |
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| T |
19273201 |
agtgtggtttatgcgcccgtggcc-attccttatggccacggattatttcctttgctcacgacattgtagtaaccgtggct |
19273122 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 4e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 71 - 269
Target Start/End: Complemental strand, 33902751 - 33902553
Alignment:
| Q |
71 |
actacaacatttttgaacttagaccatacttcaaaaaccgtagccaaagccagataatccgtggccaaagccttacaccacggtttggccaccctttttc |
170 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||||| |
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| T |
33902751 |
actacaacatttttgaacttaggccagacttcaaaaagtgtagccaaagccagaatatccgtgcccaaagctttacaccacggtttggccactatttttc |
33902652 |
T |
|
| Q |
171 |
aagtgtggtctatgcgcccgtggcctatttcctatggccacggattttttcctttgcccacgaaattgtagcaaccgtggcttcaggtactacaatagg |
269 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||| ||||||| |
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|
| T |
33902651 |
aagtgtggtttatgcgcccgtggcctattccctatggccacggactttttcctttgcccacgaaattttagtaaccgtggcttaaggtacatcaatagg |
33902553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 74 - 269
Target Start/End: Complemental strand, 14991105 - 14990910
Alignment:
| Q |
74 |
acaacatttttgaacttagaccatacttcaaaaaccgtagccaaagccagataatccgtggccaaagccttacaccacggtttggccaccctttttcaag |
173 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||| |
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| T |
14991105 |
acaacatttttgaacttaggccagacttcaaaaagtgtagccaaagccagaatatccgtgcccaaagctttacaccacggtttggccattatttttcaag |
14991006 |
T |
|
| Q |
174 |
tgtggtctatgcgcccgtggcctatttcctatggccacggattttttcctttgcccacgaaattgtagcaaccgtggcttcaggtactacaatagg |
269 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||| ||||||| |
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|
| T |
14991005 |
tgtggtttatgcgcccgtggcatattccctatggccacggactttttcctttgcccacgaaattttagtaaccgtggcttaaggtacatcaatagg |
14990910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 31890815 - 31890864
Alignment:
| Q |
20 |
gtggctcagttaatgcattgcttcaattgcgagcttcctgatggtatgtc |
69 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| |||| |||||| |
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|
| T |
31890815 |
gtggctcagctaatgcattgcttcaattgggagcttccggatgctatgtc |
31890864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 71 - 252
Target Start/End: Original strand, 50154016 - 50154195
Alignment:
| Q |
71 |
actacaacatttttgaacttagaccatacttcaaaaaccgtagccaaagccagataatccgtggccaaagccttacaccacggtttggccaccctttttc |
170 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||| | ||||||||||||| ||||||||||||||| ||||||||||||||||||||| || ||| |
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|
| T |
50154016 |
actacaacatttttgaacataggccatacttcaaaaagggcagccaaagccagaaaatccgtggccaaagtcttacaccacggtttggccactattattc |
50154115 |
T |
|
| Q |
171 |
aagtgtggtctatgcgcccgtggcctatttcctatggccacggattttttcctttgcccacgaaattgtagcaaccgtggct |
252 |
Q |
| |
|
||||||||||||||||||||||||| || || ||| ||||||||||||||||| |||||||||||||||| |||||||||| |
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|
| T |
50154116 |
aagtgtggtctatgcgcccgtggcc--ttcccaatgaccacggattttttccttagcccacgaaattgtagtaaccgtggct |
50154195 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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