View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_low_20 (Length: 350)
Name: NF5539_low_20
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 50307197 - 50306876
Alignment:
| Q |
13 |
atactacgtaggtaataattaatttataaaaaa-tcagagattagaaaatagaagtataacaaattccgtcgccgaatattagagatgttaaaattgggg |
111 |
Q |
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| T |
50307197 |
atactacgtaggtaataattaatttataaaaaaatcagagattagaaaatagaagtataacaaattccgttgccgaatattagagatgttaaaattgggg |
50307098 |
T |
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| Q |
112 |
attaatttccttttataacttttcaagtttgtttgataatataaaataattatgtggatataaacaatgtagtatatacttacttgttttttggcaaaat |
211 |
Q |
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| T |
50307097 |
attaatttccttttataacttttcaagtttgtttgataatataaaataattatgtggatataaacaatgtattagatacttacttgttttttggcaaaat |
50306998 |
T |
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| Q |
212 |
caaggagatgagctgagtcaaattctttgttttcacatttgactttctgattatatttggcaagcaaatcactgtatacagtaaacaagaacgatgtgct |
311 |
Q |
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| T |
50306997 |
caaggagatgagctgagtcaaattctttgttttcacatttgactatctgattatatttggcaagcaaatcactgtatacagtaaacaagaacgatgtgct |
50306898 |
T |
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| Q |
312 |
ggtggcatattgtgtattggct |
333 |
Q |
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| T |
50306897 |
gatggcatattgtgtattggct |
50306876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 186 - 333
Target Start/End: Original strand, 48525915 - 48526062
Alignment:
| Q |
186 |
tatacttacttgttttttggcaaaatcaaggagatgagctgagtcaaattctttgttttcacatttgactttctgattatatttggcaagcaaatcactg |
285 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| ||||| || |||||||||||||||||||||||| |
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| T |
48525915 |
tatacttacttgttttttggcaaaatcaaggacatgagatgagtcaaattctttgtttccacatttaactttttgtttatatttggcaagcaaatcactg |
48526014 |
T |
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| Q |
286 |
tatacagtaaacaagaacgatgtgctggtggcatattgtgtattggct |
333 |
Q |
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| T |
48526015 |
tataccgtgaacaagaaagatgtgcttgtagcatattgtgtattggct |
48526062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 184 - 332
Target Start/End: Original strand, 7221320 - 7221468
Alignment:
| Q |
184 |
tatatacttacttgttttttggcaaaatcaaggagatgagctgagtcaaattctttgttttcacatttgactttctgattatatttggcaagcaaatcac |
283 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| || ||||||||||||||||| ||||||| |
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| T |
7221320 |
tatatacttacttgcattttggcaaaatcaaggagatgggctgaatcaaattctttgtttccacatttgaccttttgattatatttggcaagtaaatcac |
7221419 |
T |
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| Q |
284 |
tgtatacagtaaacaagaacgatgtgctggtggcatattgtgtattggc |
332 |
Q |
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| T |
7221420 |
tatatacagtgaacaagaaagatgtaccggtggcatattgtgtattggc |
7221468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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