View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5539_low_21 (Length: 348)
Name: NF5539_low_21
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 43772613 - 43772275
Alignment:
| Q |
10 |
catcatcaataatattcgactgaaaattttactatgtgccttaaa-caaccagccattctagactcctcttccttgaaaatgtaaaattttacagtacat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43772613 |
catcatcaataatattcgactgaaaattttaccatgtgccttaaaacaaccagccattctagactcctcttccttgaaaatgtataattttacagtacat |
43772514 |
T |
|
| Q |
109 |
aatgatttactacactgattttctgcat---------aaatgatagatgacattatt--------gattgcatcatcatggattttcacgcttcaaatgt |
191 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43772513 |
aatgatttactacactgattttctgcatcaattacataaatgatagatgacattattatcatattgattgcatcatcatggaatttcacgcttcaaatgt |
43772414 |
T |
|
| Q |
192 |
acaaacgaaataaaaaattcggtcgttggacaattggacaatgagctcaatttcaagcttagcctgaataataatagtctcaactattgcaaattagttt |
291 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43772413 |
acaaacgaaataaaaaatttggtcgttggacaattggacaatgagctcaatttcaagcttagcctgaataataatagtctcaactattgcaaattagttt |
43772314 |
T |
|
| Q |
292 |
gccttgacaacttgaggcagtgatttgagaagtgccgag |
330 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43772313 |
gccttgacaacctgaggcagtgatttgagaagtgccgag |
43772275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 42359046 - 42358730
Alignment:
| Q |
11 |
atcatcaataatattcgact--gaaaattttactatgtgccttaaacaaccagccattctagactcctcttccttgaaaatgtaaaattttacagtacat |
108 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||| | |||||||||||||||||| | | ||||||||||||| |||||| | | ||| |
|
|
| T |
42359046 |
atcatcaataatattcaacttggaaaattttactatgtgccttata-aaccagccattctagactaatatgccttgaaaatgtattattttaaattgcat |
42358948 |
T |
|
| Q |
109 |
aatgatttactacactgattttctgcataaatgatagatgacattatt--------gattgcatcatcatggattttcacgcttcaaatgtacaaacgaa |
200 |
Q |
| |
|
|| ||||||| |||| ||||||||||||| | ||||| ||||||| |||||||||||||| ||||||| | ||||||||||||| || |
|
|
| T |
42358947 |
aaggatttacagcactaattttctgcataa---acagatggcattattaacagatcaattgcatcatcatgaattttcaggtttcaaatgtacaagtcaa |
42358851 |
T |
|
| Q |
201 |
ataa--aaaattcggtcgttggacaattggacaatgagctcaatttcaagcttagcctgaata-ataatagtctcaactattgcaaattagtttgccttg |
297 |
Q |
| |
|
|||| || |||| | | ||||| ||||| ||||||||| |||| ||||||||| | | ||||||||||||| || |||||||||||||||| |
|
|
| T |
42358850 |
ataaagaatattccgacaatggac-----gacaaggagctcaataccaagtatagcctgaaaataaaatagtctcaactcctgtaaattagtttgccttg |
42358756 |
T |
|
| Q |
298 |
acaacttgaggcagtgatttgagaag |
323 |
Q |
| |
|
||||| ||||| || ||||||||||| |
|
|
| T |
42358755 |
acaacctgaggtagagatttgagaag |
42358730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University