View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5539_low_23 (Length: 328)

Name: NF5539_low_23
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5539_low_23
NF5539_low_23
[»] chr7 (17 HSPs)
chr7 (19-311)||(1247851-1248144)
chr7 (180-307)||(25617814-25617941)
chr7 (177-321)||(8062493-8062641)
chr7 (224-311)||(27080611-27080698)
chr7 (224-311)||(27197603-27197690)
chr7 (176-306)||(38838264-38838394)
chr7 (224-311)||(2945214-2945301)
chr7 (252-311)||(38300195-38300254)
chr7 (257-311)||(24658654-24658708)
chr7 (224-307)||(25233147-25233230)
chr7 (257-309)||(1691881-1691933)
chr7 (257-311)||(33941457-33941511)
chr7 (259-311)||(46090011-46090063)
chr7 (256-311)||(8256779-8256834)
chr7 (264-307)||(33598058-33598101)
chr7 (252-311)||(43265761-43265820)
chr7 (223-307)||(26787475-26787560)
[»] chr6 (9 HSPs)
chr6 (214-311)||(22260212-22260308)
chr6 (252-311)||(6689423-6689482)
chr6 (252-311)||(21883484-21883543)
chr6 (252-311)||(18817139-18817198)
chr6 (252-311)||(24901908-24901967)
chr6 (260-311)||(25085251-25085302)
chr6 (223-307)||(14607587-14607671)
chr6 (257-309)||(2919863-2919915)
chr6 (132-170)||(20723048-20723086)
[»] chr8 (11 HSPs)
chr8 (179-311)||(41303324-41303461)
chr8 (176-309)||(3662128-3662266)
chr8 (208-309)||(4587107-4587208)
chr8 (260-311)||(2148616-2148667)
chr8 (227-311)||(24556724-24556808)
chr8 (224-307)||(44873485-44873568)
chr8 (252-311)||(45486022-45486081)
chr8 (255-311)||(29866395-29866451)
chr8 (257-311)||(6802580-6802634)
chr8 (257-303)||(7387963-7388009)
chr8 (132-173)||(35949627-35949668)
[»] chr5 (13 HSPs)
chr5 (184-311)||(11498199-11498331)
chr5 (214-311)||(11505555-11505653)
chr5 (214-311)||(11512949-11513047)
chr5 (214-311)||(11520325-11520423)
chr5 (214-311)||(11527733-11527831)
chr5 (214-301)||(11535150-11535237)
chr5 (252-307)||(5569187-5569242)
chr5 (224-311)||(17076439-17076526)
chr5 (252-311)||(43144790-43144849)
chr5 (252-306)||(36745166-36745220)
chr5 (260-311)||(36633810-36633861)
chr5 (271-311)||(25819323-25819363)
chr5 (252-307)||(39509309-39509364)
[»] chr2 (10 HSPs)
chr2 (252-315)||(3356909-3356972)
chr2 (257-311)||(32033206-32033260)
chr2 (252-311)||(4075669-4075728)
chr2 (256-307)||(38417962-38418013)
chr2 (252-307)||(18703482-18703537)
chr2 (252-301)||(7700569-7700618)
chr2 (208-302)||(20966335-20966425)
chr2 (224-311)||(7165409-7165496)
chr2 (251-311)||(11562231-11562291)
chr2 (275-307)||(16639002-16639034)
[»] chr1 (10 HSPs)
chr1 (252-311)||(6226909-6226968)
chr1 (252-311)||(25031172-25031231)
chr1 (252-311)||(27464078-27464137)
chr1 (252-311)||(9477852-9477911)
chr1 (252-311)||(1016832-1016891)
chr1 (252-307)||(31738114-31738169)
chr1 (257-311)||(9539433-9539487)
chr1 (257-311)||(10780989-10781043)
chr1 (252-309)||(34912537-34912594)
chr1 (252-302)||(8065207-8065257)
[»] chr3 (16 HSPs)
chr3 (214-311)||(41897680-41897777)
chr3 (252-311)||(24310103-24310162)
chr3 (224-311)||(7856697-7856784)
chr3 (252-311)||(23778484-23778543)
chr3 (252-311)||(26285641-26285700)
chr3 (256-307)||(35502350-35502401)
chr3 (252-311)||(38573203-38573262)
chr3 (252-311)||(26903377-26903436)
chr3 (252-311)||(36617604-36617663)
chr3 (252-311)||(36475695-36475754)
chr3 (264-307)||(30136823-30136866)
chr3 (264-307)||(30142952-30142995)
chr3 (264-307)||(30146374-30146417)
chr3 (224-311)||(36477862-36477949)
chr3 (257-311)||(25032076-25032130)
chr3 (262-307)||(6714029-6714074)
[»] chr4 (11 HSPs)
chr4 (252-311)||(4377508-4377568)
chr4 (215-309)||(35255100-35255194)
chr4 (214-311)||(40407810-40407907)
chr4 (252-311)||(2815800-2815859)
chr4 (252-311)||(36248099-36248158)
chr4 (257-306)||(2158862-2158911)
chr4 (224-311)||(50723122-50723209)
chr4 (252-309)||(24153746-24153803)
chr4 (229-309)||(56094871-56094951)
chr4 (251-311)||(33518301-33518361)
chr4 (252-307)||(1112225-1112280)
[»] scaffold0535 (1 HSPs)
scaffold0535 (252-307)||(9901-9956)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 1248144 - 1247851
Alignment:
Q  19 agttagcgtccaaaacatgactcgaacgatactatgagtgcaaagctctatgaacgctcatatgtgatgacatgaggcaaatctctcaaaatttgaatat 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1248144 agttagcgtccaaaacatgactcaaacgatactatgagtgcaaagctctatgaacgctcacatgtgatgacatgaggcaaatctctcaaaatttgaatat 1248045  T
Q  119 ggtcaattaacggtcggtttggattagttttcaatcaaaaaa-tgtttgaaccgatcagggcggattcagatatttggtgtatgtgagggtaaaatctaa 217  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1248044 ggtcaattaagggtcggtttggattagttttcaatcaaaaaaatgtttgaaccgatcagggcagattcagatatttggtgtatgtgagggtaaaatctaa 1247945  T
Q  218 gttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1247944 gttgctaacacttgcactttctaccgacaaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 1247851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 180 - 307
Target Start/End: Original strand, 25617814 - 25617941
Alignment:
Q  180 ggattcagatatttggtgtatgtgagggtaaaatctaagttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatca 279  Q
    |||| |||| |||||||| ||||| || ||||||||||||||||||||||||||||| ||||||| |||   ||| ||||||||||||||||||||||||    
T  25617814 ggatccagacatttggtgcatgtggggctaaaatctaagttgctaacacttgcacttgctaccgacaaatacaaaatcaacttcaaaagcttataaatca 25617913  T
Q  280 tagcaaatgtgttgcacttatttgtttc 307  Q
    ||||||||||||| || |||||||||||    
T  25617914 tagcaaatgtgttacatttatttgtttc 25617941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 177 - 321
Target Start/End: Original strand, 8062493 - 8062641
Alignment:
Q  177 ggcggattcagatatttggtgtatgtgagggtaaaatct----aagttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagctta 272  Q
    |||||||||||| |||||||| ||||| || ||||||||    |||||||||||||||||||||   |||| |||||  |||| ||| ||||||| ||||    
T  8062493 ggcggattcagacatttggtgcatgtggggctaaaatctggctaagttgctaacacttgcacttggcaccggtaaaagcaaagccaatttcaaaaactta 8062592  T
Q  273 taaatcatagcaaatgtgttgcacttatttgtttccacaggttctgctc 321  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  8062593 taaatcatagcaaatgtgttgcacttatttgtttccacaagttttgctc 8062641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 27080611 - 27080698
Alignment:
Q  224 aacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||| || ||||||| ||||   ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27080611 aacacttgcagttgctaccgacaaaagagaagccaacttcaaaaacttataaatcatagcaaatgtgttgcacttatttgtttccaca 27080698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 27197690 - 27197603
Alignment:
Q  224 aacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||| || ||||||| ||||   ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27197690 aacacttgcagttgctaccgacaaaagagaagccaacttcaaaaacttataaatcatagcaaatgtgttgcacttatttgtttccaca 27197603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 306
Target Start/End: Original strand, 38838264 - 38838394
Alignment:
Q  176 gggcggattcagatatttggtgtatgtgagggtaaaatctaagttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataa 275  Q
    |||| ||| |||| |||||||  ||||| || |||||||||||||||||||||||||| ||  || |||  |||  ||||  ||||||||||||||||||    
T  38838264 gggctgatccagacatttggtacatgtggggctaaaatctaagttgctaacacttgcatttattatcgaccaaagcaaagctaacttcaaaagcttataa 38838363  T
Q  276 atcatagcaaatgtgttgcacttatttgttt 306  Q
    ||||| ||||||||||||| |||||||||||    
T  38838364 atcattgcaaatgtgttgcgcttatttgttt 38838394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 2945301 - 2945214
Alignment:
Q  224 aacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||| || ||||||| || |  ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||    
T  2945301 aacacttgcagttgctaccgacaagagcaaagtcaacttcaaaagtttataaatcatagcaaatgtgttgcatttatttgcttccaca 2945214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 38300254 - 38300195
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  38300254 aaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccaca 38300195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 24658654 - 24658708
Alignment:
Q  257 caacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24658654 caacttcaaaagtttataaatcatagcaaatgtgttgcacttatttgtttccaca 24658708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 25233147 - 25233230
Alignment:
Q  224 aacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    ||||||||||||| ||||| | || |  |||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  25233147 aacacttgcacttgctacccacaagagcaaagccaatttcaaaagcttataaatcataacaaatgtgttgcacttatttgtttc 25233230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 1691881 - 1691933
Alignment:
Q  257 caacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttcca 309  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  1691881 caacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttcca 1691933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 33941511 - 33941457
Alignment:
Q  257 caacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  33941511 caacttcaaaagtttataatccatagcaaatgtgttgcacttatttgtttccaca 33941457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 46090063 - 46090011
Alignment:
Q  259 acttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  46090063 acttccaaagcttataaaccatagcaaatgtgttgcacttatttgttttcaca 46090011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 8256779 - 8256834
Alignment:
Q  256 tcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||||||||||||||  |||||||||||| ||||||||||| ||||||||    
T  8256779 tcaacttcaaaagcttataaacaatagcaaatgtgctgcacttatttatttccaca 8256834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 33598058 - 33598101
Alignment:
Q  264 aaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    |||||||||||||||||| ||||||||||||||||| |||||||    
T  33598058 aaaagcttataaatcataacaaatgtgttgcacttaattgtttc 33598101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 43265820 - 43265761
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| |||||||||||||||| ||| || ||||| ||| |||||||||||||||||||||    
T  43265820 aaagccaacttcaaaagcttaaaaaccaaagcaagtgtcttgcacttatttgtttccaca 43265761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 26787475 - 26787560
Alignment:
Q  223 taacacttgcactttctaccgataaaattaaagtcaacttcaaaa-gcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    ||||||||||| ||  |||||||||||  ||| |||||||||||| | ||||||| |||| ||||| ||||||||||| |||||||    
T  26787475 taacacttgcaattgataccgataaaagcaaaatcaacttcaaaaagtttataaaccataacaaatatgttgcacttacttgtttc 26787560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 22260212 - 22260308
Alignment:
Q  214 ctaagttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||||||||||||||||||||| |||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  22260212 ctaagttgctaacacttgcacttactaccgataaaagtaaagccaaattcaaaagcttataaa-catagcaaatgtgttgtacttatttgtttccaca 22260308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 6689423 - 6689482
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  6689423 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgtacttatttgttttcaca 6689482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 21883484 - 21883543
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| |||||||||||| ||||||| |||||||||||||||| |||||||||||||||||    
T  21883484 aaagccaacttcaaaagtttataaaccatagcaaatgtgttgtacttatttgtttccaca 21883543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 18817139 - 18817198
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| |||||||||||||||| ||| || ||||||||| |||||||||||||||||||||    
T  18817139 aaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccaca 18817198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 24901908 - 24901967
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| |||||||||||||||| ||| || ||||||||| |||||||||||||||||||||    
T  24901908 aaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccaca 24901967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 25085302 - 25085251
Alignment:
Q  260 cttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  25085302 cttcaaaagcttatgaatcatagtaaatgtgttgcacttatttgttttcaca 25085251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 14607671 - 14607587
Alignment:
Q  223 taacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    ||||||||||| || ||||||  || |  ||||||||||||||||| ||||||| |||| |  ||||||||||||||||||||||    
T  14607671 taacacttgcagttgctaccgtcaagagcaaagtcaacttcaaaagtttataaaccataacttatgtgttgcacttatttgtttc 14607587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 2919915 - 2919863
Alignment:
Q  257 caacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttcca 309  Q
    |||||||||||| | ||||| |||| ||||||||||||| |||||||||||||    
T  2919915 caacttcaaaagttaataaaccataacaaatgtgttgcatttatttgtttcca 2919863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 20723086 - 20723048
Alignment:
Q  132 tcggtttggattagttttcaatcaaaaaatgtttgaacc 170  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  20723086 tcggtttggactagttttcagtcaaaaaatgtttgaacc 20723048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 179 - 311
Target Start/End: Complemental strand, 41303461 - 41303324
Alignment:
Q  179 cggattcagatatttggtgtatgtgaggg-taaaatcta----agttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttat 273  Q
    |||||||||| |||||||| ||||| ||| |||||||||    ||||||||||||||||| || ||| ||| ||||  |||  ||||||||||||||||     
T  41303461 cggattcagacatttggtgcatgtgggggctaaaatctagctaagttgctaacacttgcatttgctatcgacaaaagcaaaaccaacttcaaaagcttac 41303362  T
Q  274 aaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  41303361 aaatcatagcaaatgtgttgcacttatttgttttcaca 41303324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 176 - 309
Target Start/End: Original strand, 3662128 - 3662266
Alignment:
Q  176 gggcggattcagatatttggtgtatgtgagggtaaaatct----aagttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagctt 271  Q
    ||||||||||||| |||| ||| ||||| || ||||||||    |||| | ||||||||||| || |||||| |||||  |||| ||||||||||| |||    
T  3662128 gggcggattcagacatttagtgaatgtggggctaaaatctgactaagtcgataacacttgcatttgctaccgttaaaagcaaagccaacttcaaaaactt 3662227  T
Q  272 -ataaatcatagcaaatgtgttgcacttatttgtttcca 309  Q
     ||||||||||||||||||| ||||||||||||||||||    
T  3662228 tataaatcatagcaaatgtgctgcacttatttgtttcca 3662266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 309
Target Start/End: Complemental strand, 4587208 - 4587107
Alignment:
Q  208 taaaatctaagttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    |||||| |||||||||||||||| ||||| ||| | | |||| ||||  ||||||||||| |||||||| ||| |||||||||||| |||||||||||||    
T  4587208 taaaatttaagttgctaacacttacacttgctatcaacaaaagtaaaaccaacttcaaaaacttataaaccattgcaaatgtgttggacttatttgtttc 4587109  T
Q  308 ca 309  Q
    ||    
T  4587108 ca 4587107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 2148616 - 2148667
Alignment:
Q  260 cttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  2148616 cttcaaaagcttataaatcatagaaaatgtgttgcacttatttgttttcaca 2148667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 311
Target Start/End: Complemental strand, 24556808 - 24556724
Alignment:
Q  227 acttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||||| || |||||| ||| |  |||| ||||||||||| |||||||| |||| |||||||||||||||||||||||| ||||    
T  24556808 acttgcagttgctaccggtaagagcaaagccaacttcaaaatcttataaaccataacaaatgtgttgcacttatttgttttcaca 24556724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 44873485 - 44873568
Alignment:
Q  224 aacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    |||||||||| || ||||||  ||||  |||| |||||||||||| |||||||||||| ||| |||||||||| ||||||||||    
T  44873485 aacacttgcagttgctaccggcaaaagcaaagccaacttcaaaagtttataaatcataacaattgtgttgcacatatttgtttc 44873568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 45486081 - 45486022
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| |||||||||||||||| ||| || ||||||||| |||||||||||||||||||||    
T  45486081 aaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccaca 45486022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 29866395 - 29866451
Alignment:
Q  255 gtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||| |||||||| ||| |||||||||||||||||||||  |||||||||||||||    
T  29866395 gtcaagttcaaaagtttagaaatcatagcaaatgtgttgcgtttatttgtttccaca 29866451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 6802634 - 6802580
Alignment:
Q  257 caacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||||||||||||| |||  ||||||||||||| ||| |||||||||||    
T  6802634 caacttcaaaagcttataaagcatttcaaatgtgttgcatttaattgtttccaca 6802580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 7388009 - 7387963
Alignment:
Q  257 caacttcaaaagcttataaatcatagcaaatgtgttgcacttatttg 303  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||||    
T  7388009 caacttcaaaagattataaatcataacaaatgtgttgcacctatttg 7387963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 35949668 - 35949627
Alignment:
Q  132 tcggtttggattagttttcaatcaaaaaatgtttgaaccgat 173  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  35949668 tcggtttggattggttttcaatcaaaaaatgtctgaaccgat 35949627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 184 - 311
Target Start/End: Complemental strand, 11498331 - 11498199
Alignment:
Q  184 tcagatatttggtgtatgtgagggtaaaat----ctaagttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatca 279  Q
    |||||||||||||| ||||| ||  |||||    |||||||||||||||||||||||||||| |||||||  ||||  ||||||||||||||||||||||    
T  11498331 tcagatatttggtgcatgtggggcgaaaatttggctaagttgctaacacttgcactttctactgataaaagcaaagcaaacttcaaaagcttataaatca 11498232  T
Q  280 tagcaaatgtgttgcacttatt-tgtttccaca 311  Q
    || ||||||  ||||||||||| ||||||||||    
T  11498231 tatcaaatgcattgcacttattatgtttccaca 11498199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 11505653 - 11505555
Alignment:
Q  214 ctaagttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatt-tgtttccaca 311  Q
    ||||||||||||||||||||||||||| ||||||||  ||||  |||||||||||||||||||||||| ||||||  ||||||||||| ||||||||||    
T  11505653 ctaagttgctaacacttgcactttctatcgataaaagcaaagcaaacttcaaaagcttataaatcatatcaaatgcattgcacttattatgtttccaca 11505555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 11513047 - 11512949
Alignment:
Q  214 ctaagttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatt-tgtttccaca 311  Q
    ||||||||||||||||||||||||||| ||||||||  ||||  |||||||||||||||||||||||| ||||||  ||||||||||| ||||||||||    
T  11513047 ctaagttgctaacacttgcactttctatcgataaaagcaaagcaaacttcaaaagcttataaatcatatcaaatgcattgcacttattatgtttccaca 11512949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 11520423 - 11520325
Alignment:
Q  214 ctaagttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatt-tgtttccaca 311  Q
    ||||||||||||||||||||||||||| ||||||||  ||||  |||||||||||||||||||||||| ||||||  ||||||||||| ||||||||||    
T  11520423 ctaagttgctaacacttgcactttctatcgataaaagcaaagcaaacttcaaaagcttataaatcatatcaaatgcattgcacttattatgtttccaca 11520325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 11527831 - 11527733
Alignment:
Q  214 ctaagttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatt-tgtttccaca 311  Q
    ||||||||||||||||||||||||||| ||||||||  ||||  |||||||||||||||||||||||| ||||||  ||||||||||| ||||||||||    
T  11527831 ctaagttgctaacacttgcactttctatcgataaaagcaaagcaaacttcaaaagcttataaatcatatcaaatgcattgcacttattatgtttccaca 11527733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 11535237 - 11535150
Alignment:
Q  214 ctaagttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatt 301  Q
    ||||||||||||||||||||||||||||||||||||   |||  |||||||||||||||||||||||| ||||||  |||||||||||    
T  11535237 ctaagttgctaacacttgcactttctaccgataaaagcgaagcaaacttcaaaagcttataaatcatatcaaatgcattgcacttatt 11535150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 5569187 - 5569242
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||    
T  5569187 aaagtcaacttcaaaagctaataaatcataacaaatgtgttgcacttatttatttc 5569242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 17076526 - 17076439
Alignment:
Q  224 aacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||| || | ||||| || | ||||| |||| ||||||||||||||| || ||||||||| |||||||||||||||||||||    
T  17076526 aacacttgcaattacaaccgacaagagtaaagccaacatcaaaagcttataaaccaaagcaaatgtcttgcacttatttgtttccaca 17076439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 43144790 - 43144849
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||||||||||||||| ||||||| ||||||||||||||| || |||||||||||||||    
T  43144790 aaagtcaacttcaaaagtttataaaccatagcaaatgtgttacatttatttgtttccaca 43144849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 36745166 - 36745220
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgttt 306  Q
    ||||||||||||||||| ||||||| |||| |||||||||||||||||| |||||    
T  36745166 aaagtcaacttcaaaagtttataaaccatatcaaatgtgttgcacttatatgttt 36745220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 36633861 - 36633810
Alignment:
Q  260 cttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||||||| | ||||| |||||||||||||||||| |||||||||||||||    
T  36633861 cttcaaaagttaataaaccatagcaaatgtgttgcatttatttgtttccaca 36633810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 25819323 - 25819363
Alignment:
Q  271 tataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  25819323 tataaatcatagcaaatgtattgcagttatttgtttccaca 25819363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 39509309 - 39509364
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    |||| |||||||||||| ||||||||| || ||||| |||||||||||||| ||||    
T  39509309 aaagccaacttcaaaagtttataaatcgtaacaaatatgttgcacttatttatttc 39509364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 3356972 - 3356909
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccacaggtt 315  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  3356972 aaagtcaacttcaaaagtttataaatcatagcaaatgtgttgcatttatttgtttccacaggtt 3356909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 32033206 - 32033260
Alignment:
Q  257 caacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  32033206 caacttcaaaagtttataaatcatagcaaatgtgttgcatttatttgtttccaca 32033260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 4075669 - 4075728
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| |||||||||||||||| ||| || ||||||||| |||||||||||||||||||||    
T  4075669 aaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccaca 4075728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 38417962 - 38418013
Alignment:
Q  256 tcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  38417962 tcaacttcaaaagcttataaatcataacaaatatgttgcacttatttatttc 38418013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 18703537 - 18703482
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    |||| |||||||||||||||||||| |||| ||||| |||| ||||||||||||||    
T  18703537 aaagccaacttcaaaagcttataaaccatatcaaatatgtttcacttatttgtttc 18703482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 7700569 - 7700618
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatt 301  Q
    ||||||||| ||||||||||||||| |||| ||||||||||| |||||||    
T  7700569 aaagtcaacgtcaaaagcttataaaccataacaaatgtgttgaacttatt 7700618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 302
Target Start/End: Complemental strand, 20966425 - 20966335
Alignment:
Q  208 taaaatctaagttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttattt 302  Q
    |||||||||||||||||| |||||| | |||| |||| ||||  |||| ||| ||||||| |||||||   ||||||||||||||| ||||||||    
T  20966425 taaaatctaagttgctaatacttgcgc-ttcttccgacaaaagcaaagccaatttcaaaaacttataa---atagcaaatgtgttgtacttattt 20966335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 7165409 - 7165496
Alignment:
Q  224 aacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||  || ||||||| ||||  || | ||| ||||||||||||| ||||||| |||||| || |||||| ||||||||||||    
T  7165409 aacacttgcggttgctaccgacaaaagcaacgccaatttcaaaagcttatgaatcataacaaatgggtcgcacttgtttgtttccaca 7165496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 11562231 - 11562291
Alignment:
Q  251 taaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||| ||||||||| || | |||||  ||||||||| ||||||| |||||||||||||||    
T  11562231 taaagccaacttcaatagttaataaactatagcaaatatgttgcatttatttgtttccaca 11562291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 16639034 - 16639002
Alignment:
Q  275 aatcatagcaaatgtgttgcacttatttgtttc 307  Q
    ||||||| |||||||||||||||||||||||||    
T  16639034 aatcataacaaatgtgttgcacttatttgtttc 16639002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 6226909 - 6226968
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  6226909 aaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccaca 6226968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 25031172 - 25031231
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||    
T  25031172 aaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcatttatttgtttccaca 25031231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 27464137 - 27464078
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  27464137 aaagccaacttcaaaagcttataaatcataacaaatgtattgcacttatttgtttccaca 27464078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 9477852 - 9477911
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| |||||||||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  9477852 aaagccaacttcaaaactttataaaccatagcaaatgtgttgcacttatttgtttccaca 9477911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 1016891 - 1016832
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| |||||||||||||||| ||| || ||||||||| |||||||||||||||||||||    
T  1016891 aaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccaca 1016832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 31738114 - 31738169
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    ||||||||||| |||| ||||||||||||| ||||||||||||| |||||||||||    
T  31738114 aaagtcaactttaaaaacttataaatcataacaaatgtgttgcatttatttgtttc 31738169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 9539487 - 9539433
Alignment:
Q  257 caacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||||| ||||||| || | |||||||||||||||||||||||||||||    
T  9539487 caacttcaaaagtttataaaccaaaacaaatgtgttgcacttatttgtttccaca 9539433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 10781043 - 10780989
Alignment:
Q  257 caacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||||| |||||||  |||| ||||||||||||||||||||||||||||    
T  10781043 caacttcaaaagtttataaactatagtaaatgtgttgcacttatttgtttccaca 10780989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 34912537 - 34912594
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttcca 309  Q
    |||| ||||||||||||||||||||  ||||  |||||||||||||||||||||||||    
T  34912537 aaagccaacttcaaaagcttataaactatagtgaatgtgttgcacttatttgtttcca 34912594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 8065207 - 8065257
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttattt 302  Q
    |||| |||||||||||| ||||||| |||| ||||||||||||| ||||||    
T  8065207 aaagccaacttcaaaagtttataaaccataacaaatgtgttgcatttattt 8065257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 41897680 - 41897777
Alignment:
Q  214 ctaagttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| ||||||||||||||| ||  | |||| ||||  ||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  41897680 ctaaattgctaacacttgcatttgattccgacaaaaacaaagctaacttcaaaagcttataaataatagcaaatgtgttgcacttatttgttttcaca 41897777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 24310103 - 24310162
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  24310103 aaagtcaacttcaaaagtttataaaccatagcaaatgtgtcgcacttatttgtttccaca 24310162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 7856697 - 7856784
Alignment:
Q  224 aacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||| || ||||||  ||||  |||| |||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||    
T  7856697 aacacttgcagttgctaccggcaaaagcaaagccaacttcaaaagtttataaaccataggaaacgtgttgcacttatttgtttccaca 7856784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 23778484 - 23778543
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| |||||||||||| ||||||| |||||||||||||||||| |||||||||||||||    
T  23778484 aaagccaacttcaaaagtttataaaccatagcaaatgtgttgcatttatttgtttccaca 23778543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 26285700 - 26285641
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||||||||||||||||||||||| ||||  |||| |||||||||||||||||||||||    
T  26285700 aaagtcaacttcaaaagcttataaaccataataaatttgttgcacttatttgtttccaca 26285641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 35502401 - 35502350
Alignment:
Q  256 tcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  35502401 tcaacttcaaaagcttataaatcataacaaatgggttgcacttatttgtttc 35502350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 38573203 - 38573262
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| |||||||||||| |||||||  |||||||||||||||||||||||||||||||||    
T  38573203 aaagccaacttcaaaagtttataaacaatagcaaatgtgttgcacttatttgtttccaca 38573262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 26903377 - 26903436
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| |||||||||||||||| ||| || ||||||||| |||||||||||||||||||||    
T  26903377 aaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccaca 26903436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 36617663 - 36617604
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| |||||||||||||||| ||| || ||||||||| |||||||||||||||||||||    
T  36617663 aaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccaca 36617604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 36475695 - 36475754
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| |||||| ||| |||| ||||||||| |||||||||||||||| ||||||||||||    
T  36475695 aaagccaacttaaaaggcttctaaatcataacaaatgtgttgcacttgtttgtttccaca 36475754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 30136823 - 30136866
Alignment:
Q  264 aaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    ||||||||||||| |||| ||||| |||||||||||||||||||    
T  30136823 aaaagcttataaaccataacaaatatgttgcacttatttgtttc 30136866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 30142952 - 30142995
Alignment:
Q  264 aaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    ||||||||||||| |||| ||||| |||||||||||||||||||    
T  30142952 aaaagcttataaaccataacaaatatgttgcacttatttgtttc 30142995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 30146374 - 30146417
Alignment:
Q  264 aaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    ||||||||||||| |||| ||||| |||||||||||||||||||    
T  30146374 aaaagcttataaaccataacaaatatgttgcacttatttgtttc 30146417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 36477949 - 36477862
Alignment:
Q  224 aacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||  || ||||||| ||||  |||| |||||||||||| |||||   ||||||||||| ||||||||||||| ||| ||||    
T  36477949 aacacttgccgttgctaccgacaaaagcaaagccaacttcaaaagtttatagggcatagcaaatgcgttgcacttatttattttcaca 36477862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 25032130 - 25032076
Alignment:
Q  257 caacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||||| | ||||| ||||  |||||||||||| |||||||||||||||    
T  25032130 caacttcaaaagttaataaaccataataaatgtgttgcatttatttgtttccaca 25032076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 6714074 - 6714029
Alignment:
Q  262 tcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    ||||||||||||||  |||| |||||||||||||| ||||||||||    
T  6714074 tcaaaagcttataagccataacaaatgtgttgcacctatttgtttc 6714029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 4377508 - 4377568
Alignment:
Q  252 aaagtcaacttcaaaagcttataaa-tcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  4377508 aaagtcaacttcaaaagtttataaaatcatagcaaatgtgttgcacttatttgtttccaca 4377568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 35255100 - 35255194
Alignment:
Q  215 taagttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttcca 309  Q
    ||||||||||||| | ||||||  || ||| ||||  ||| |||||||||||| |||||||||||||||||||||||| ||||| ||||||||||    
T  35255100 taagttgctaacattggcacttgttatcgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgttacacttgtttgtttcca 35255194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 40407907 - 40407810
Alignment:
Q  214 ctaagttgctaacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||||||||||||||| || || ||| ||| ||||  |||  |||||| |||||||||||||| || |||||| |||||||||||||||||||||||    
T  40407907 ctaagttgctaacacttacaattgctatcgacaaaagcaaaaccaactttaaaagcttataaattattgcaaatatgttgcacttatttgtttccaca 40407810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 2815800 - 2815859
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  2815800 aaagccaacttgaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccaca 2815859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 36248099 - 36248158
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||| |||||||||||| |||||||||||| |||| ||||||||||||||||||||||||    
T  36248099 aaagccaacttcaaaagtttataaatcataacaaaagtgttgcacttatttgtttccaca 36248158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 2158862 - 2158911
Alignment:
Q  257 caacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgttt 306  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  2158862 caacttcaaaagcttacaaaccatagcaaatgtgttgcacttatttgttt 2158911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 50723209 - 50723122
Alignment:
Q  224 aacacttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    |||||||||| || ||||||  || | |||||||||||||||||| | ||||| || ||||||||||||||| |||||||||| ||||    
T  50723209 aacacttgcagttgctaccggcaagagtaaagtcaacttcaaaagttaataaaccacagcaaatgtgttgcatttatttgttttcaca 50723122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 24153746 - 24153803
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttcca 309  Q
    ||||||||||||| | |||||||||  |||| ||||||||||||||||||||||||||    
T  24153746 aaagtcaacttcacatgcttataaactatagtaaatgtgttgcacttatttgtttcca 24153803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 56094871 - 56094951
Alignment:
Q  229 ttgcactttctaccgataaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttcca 309  Q
    ||||||||  || ||| |||| ||||| ||| ||||||| |||  |||||||| |||||||||||||||||||||||||||    
T  56094871 ttgcacttgatatcgacaaaagtaaagccaagttcaaaaacttgaaaatcatatcaaatgtgttgcacttatttgtttcca 56094951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 33518301 - 33518361
Alignment:
Q  251 taaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 311  Q
    ||||| |||||| ||||| ||||||| ||   |||||||||||||||||||||||||||||    
T  33518301 taaagccaactttaaaagtttataaaccacgacaaatgtgttgcacttatttgtttccaca 33518361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 1112225 - 1112280
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    |||| ||||||||||| |||||||| |||  ||||||||||||||||| |||||||    
T  1112225 aaagccaacttcaaaaacttataaaccatcacaaatgtgttgcacttaattgtttc 1112280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 9901 - 9956
Alignment:
Q  252 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttc 307  Q
    |||||||||||||||| ||||||||  ||| |||||||||||||||||||||||||    
T  9901 aaagtcaacttcaaaatcttataaaatataacaaatgtgttgcacttatttgtttc 9956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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