View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_low_25 (Length: 312)
Name: NF5539_low_25
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 40871717 - 40871993
Alignment:
| Q |
17 |
tcctatcaaatagatcatttttatttaaaagtcccatgtggtcccttttctaagatatatactcattaacattataatgtcacgtttattaaacaaaaca |
116 |
Q |
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| T |
40871717 |
tcctatcaaatagatcatttttatttaaaagtcccatgtggtcccttttctaagatatatactcattaacattataatgtcacgtttattaaacaaaaca |
40871816 |
T |
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| Q |
117 |
aagcatatagctannnnnnngtatgttgctttatggcacaattaattaatatatgnnnnnnnnntatatgcagatttttggtggatgatgttccaataag |
216 |
Q |
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| T |
40871817 |
aagcatatagctatttttttgtatgttgctttatggcacaattaattaatatatgaaaaaa----atatgtagatttttggtggatgatgttccaataag |
40871912 |
T |
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| Q |
217 |
gaggtatcctaggaagagtgatgcaacattcccttcaagaccaatgtatgtgtatggatcaatctgggatgcatctgcatg |
297 |
Q |
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| T |
40871913 |
gaggtatcctaggaagagtgatgcaacattcccttcaagaccaatgtatgtgtatggatcaatctgggatgcatctgcatg |
40871993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 184 - 292
Target Start/End: Complemental strand, 21083919 - 21083811
Alignment:
| Q |
184 |
atgcagatttttggtggatgatgttccaataaggaggtatcctaggaagagtgatgcaacattcccttcaagaccaatgtatgtgtatggatcaatctgg |
283 |
Q |
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|||||||||||| || |||||||| || ||||| |||||||||||||| |||||||| || | |||| |||||||||||||| | ||||||||||| ||| |
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| T |
21083919 |
atgcagatttttagtagatgatgtgcccataagaaggtatcctaggaaaagtgatgccacctaccctacaagaccaatgtatctctatggatcaatttgg |
21083820 |
T |
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| Q |
284 |
gatgcatct |
292 |
Q |
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| T |
21083819 |
gatgcatct |
21083811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 288
Target Start/End: Original strand, 41270213 - 41270314
Alignment:
| Q |
187 |
cagatttttggtggatgatgttccaataaggaggtatcctaggaagagtgatgcaacattcccttcaagaccaatgtatgtgtatggatcaatctgggat |
286 |
Q |
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||||||| | ||||||||||| |||||||||||||| || ||||||||||| ||||||| ||| |||||||||| | ||||| ||||| |||||| |
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| T |
41270213 |
cagatttcttgtggatgatgtgccaataaggaggtacccgaggaagagtgacacaacatttcctattagaccaatgtggctttatggttcaatatgggat |
41270312 |
T |
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| Q |
287 |
gc |
288 |
Q |
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|| |
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| T |
41270313 |
gc |
41270314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 27684289 - 27684198
Alignment:
| Q |
197 |
gtggatgatgttccaataaggaggtatcctaggaagagtgatgcaacattcccttcaagaccaatgtatgtgtatggatcaatctgggatgc |
288 |
Q |
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||||||||| | || ||||||||||| || |||||||||||||||||||| || ||||||||||| || ||||| || || |||||||| |
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| T |
27684289 |
gtggatgatatgcccataaggaggtacccaaggaagagtgatgcaacatttccactaagaccaatgtgggtttatgggtctatttgggatgc |
27684198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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