View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_low_30 (Length: 262)
Name: NF5539_low_30
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_30 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 34218349 - 34218105
Alignment:
| Q |
18 |
acaaagagcatagacagatgagatttaaatgagatttgtttcccttgattcttgatccctgaaaatttgcaagagatcactattataatagacattataa |
117 |
Q |
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| T |
34218349 |
acaaagagcatagacagatgagatttaaatgagatttgtttcccttgattcttgatccctgaaaatttgcaagagatcactattataatagacattataa |
34218250 |
T |
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| Q |
118 |
ttattatataaaggatcgcccttcgatacaaacctggannnnnnncttggtgtaaggcacttcactgttacctgcgaaatacataaccactgaatttcaa |
217 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
34218249 |
ttattatataaaggatcacccttcgatacaaacctgggtttttttcttggtgtaaggcacttcactgtcacctgcaaaatacataaccactgaatttcaa |
34218150 |
T |
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| Q |
218 |
actctgttcaatggcatttttctgcaatagcattcctaccaaaat |
262 |
Q |
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| T |
34218149 |
actctgttcaatgacatttttctgaaatggcattcctaccaaaat |
34218105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 41 - 262
Target Start/End: Original strand, 2682406 - 2682627
Alignment:
| Q |
41 |
tttaaatgagatttgtttcccttgattcttgatccctgaaaatttgcaagagatcactattataatagacattataattattatataaaggatcgccctt |
140 |
Q |
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| T |
2682406 |
tttaaatgagatttgtttcccttgattcttgatccctgaaaatttgcaagagatcactattataatagacattataattattatataaaggatcaccctt |
2682505 |
T |
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| Q |
141 |
cgatacaaacctggannnnnnncttggtgtaaggcacttcactgttacctgcgaaatacataaccactgaatttcaaactctgttcaatggcatttttct |
240 |
Q |
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| T |
2682506 |
cgatacaaacctgggtttttttcttggtgtaaggcactgcactgttacctgcaaaatacataaccactgaatttcaaactctgttcaatggcatttttct |
2682605 |
T |
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| Q |
241 |
gcaatagcattcctaccaaaat |
262 |
Q |
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| T |
2682606 |
gcaatagcattcctacctaaat |
2682627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 41 - 262
Target Start/End: Complemental strand, 5480905 - 5480684
Alignment:
| Q |
41 |
tttaaatgagatttgtttcccttgattcttgatccctgaaaatttgcaagagatcactattataatagacattataattattatataaaggatcgccctt |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5480905 |
tttaaatgagatttgtttcccttgattcttgatccctgaaaatttgcaagagatcactattataatagacattataattattatataaaggatcaccctt |
5480806 |
T |
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| Q |
141 |
cgatacaaacctggannnnnnncttggtgtaaggcacttcactgttacctgcgaaatacataaccactgaatttcaaactctgttcaatggcatttttct |
240 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5480805 |
cgatacaaacctgggtttttttcttggtgtaaggcactgcactgttacctgcaaaatacataaccactgaatttcaaactctgttcaatggcatttttct |
5480706 |
T |
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| Q |
241 |
gcaatagcattcctaccaaaat |
262 |
Q |
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||||||||||||||||| |||| |
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| T |
5480705 |
gcaatagcattcctacctaaat |
5480684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 41 - 262
Target Start/End: Original strand, 45005832 - 45006053
Alignment:
| Q |
41 |
tttaaatgagatttgtttcccttgattcttgatccctgaaaatttgcaagagatcactattataatagacattataattattatataaaggatcgccctt |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45005832 |
tttaaatgagatttgtttcccttgattcttgatccctgaaaatttgcaagagatcactattataatagacattataattattatataaaggatcaccctt |
45005931 |
T |
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| Q |
141 |
cgatacaaacctggannnnnnncttggtgtaaggcacttcactgttacctgcgaaatacataaccactgaatttcaaactctgttcaatggcatttttct |
240 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45005932 |
cgatacaaacctgggtttttttcttggtgtaaggcactgcactgttacctgcaaaatacataaccactgaatttcaaactctgttcaatggcatttttct |
45006031 |
T |
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| Q |
241 |
gcaatagcattcctaccaaaat |
262 |
Q |
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| T |
45006032 |
gcaatagcattcctacctaaat |
45006053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 51 - 262
Target Start/End: Complemental strand, 27147440 - 27147222
Alignment:
| Q |
51 |
atttgtttcccttgattcttgatccctgaaaatttgcaagagatcactatt-------ataatagacattataattattatataaaggatcgcccttcga |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||| |||| |||||| |
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| T |
27147440 |
atttgtttcccttgattcttgatccctgaaaatttgcaattgatcactatttaatgtaaaaatagacattataattattatataaaagatcacccttcac |
27147341 |
T |
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| Q |
144 |
tacaaacctggannnnnnncttggtgtaaggcacttcactgttacctgcgaaatacataaccactgaatttcaaactctgttcaatggcatttttctgca |
243 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27147340 |
tacaaacctgggtttttttcttggtgtaaggcactgcactgttacctgcaaaatacataaccactgaatttcaaactctgttcaatggcatttttctgca |
27147241 |
T |
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| Q |
244 |
atagcattcctaccaaaat |
262 |
Q |
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|||||||||||||| |||| |
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| T |
27147240 |
atagcattcctacctaaat |
27147222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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