View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5539_low_32 (Length: 259)
Name: NF5539_low_32
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_32 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 6201320 - 6201079
Alignment:
| Q |
19 |
cacagaggcacacaatgatgcaagatcaaagcatgaagtctctcttgttacgtattgcagcattagaacccagctccacgatccactgtccattcctctc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6201320 |
cacagaggcacacaatgatgcaagatcaaagcatgaagtctctcttgttacgtattgcatcattagaacccagctccacgatccactgtccattcctctc |
6201221 |
T |
|
| Q |
119 |
ttccctccttaacaaatgtcttctacgagttttcaaattccctacccaccctccttatgactcggttagaaataactctttctttattttcttttgttta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6201220 |
ttccctccttaacaaatgtcttctacgagttttcaaattccctacccaccctccttatgactcggttagaaataactctttctttatttacttttgttta |
6201121 |
T |
|
| Q |
219 |
tgtcaatatatttgaatctattaat-aaatctaacaagtttt |
259 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
6201120 |
tgtcaatatatttgaatctattaataaaacctaacaagtttt |
6201079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 43367613 - 43367388
Alignment:
| Q |
22 |
agaggcacacaatgatgcaagatcaaagcatgaagtctctcttgttacgtattgcagcattagaacccagctccacgatccactgtccattcctctcttc |
121 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| || |
|
|
| T |
43367613 |
agaggcacaccatgctgcaagatcaaaggatgaagtctctcttgttgcgtattgcagcattagaacccagctacacgatccactgtccactcctctcctc |
43367514 |
T |
|
| Q |
122 |
cctccttaacaaatgtcttctacgagttttcaaattccctacccaccctccttatgactcggttagaaa-taactctttctttattttcttttgtttatg |
220 |
Q |
| |
|
|||| ||||| | ||||||| |||| ||||||||| ||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43367513 |
cctcgttaaccattgtcttcaacgaattttcaaatcccccactcaccctccttatgactcggttagaaactaactctttctttattttcttttgtttatg |
43367414 |
T |
|
| Q |
221 |
tcaatatatttgaatctattaataaa |
246 |
Q |
| |
|
||||| |||||||| ||| |||||| |
|
|
| T |
43367413 |
tcaattgatttgaatttataaataaa |
43367388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University