View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_low_36 (Length: 252)
Name: NF5539_low_36
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_36 |
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| [»] scaffold0149 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 237
Target Start/End: Original strand, 797946 - 798178
Alignment:
| Q |
5 |
taatctcattttttattacaagggtttatcaatgtattgctgattctgattgtcaaccatggatgtgctcccttggtatgaaaccgaagtgtatttctgt |
104 |
Q |
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| T |
797946 |
taatctcattttttattacaagggtttatcaatgtattgctgattctgattgtcaaccatggatgtgctcccttggtatgaaaccgaagtgtatttctgt |
798045 |
T |
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| Q |
105 |
gcttcgagtgtgtaaatgtcatgggtggcaaaaatagaatgtgctcatatgattcttcatttagtatcggacccaagagagtacataaatactctgctac |
204 |
Q |
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| T |
798046 |
gcttcgaatgtgtaaatgtcatgggtggcaaaaatataatgtgctcacatgattcttcatttagtgtcggatccaagagagtacataaatactctgctac |
798145 |
T |
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| Q |
205 |
aatataccatgagttgccatttagttaatttct |
237 |
Q |
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| T |
798146 |
aatataccacgagttgccatttagttaatttct |
798178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 797204 - 797263
Alignment:
| Q |
147 |
gctcatatgattcttcatttagtatcggacccaagagagtacataaatactctgctacaa |
206 |
Q |
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| T |
797204 |
gctcacatgattcttcatttagtgtcagagccaagagagtacacaaatactctgctacaa |
797263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 2506718 - 2506641
Alignment:
| Q |
160 |
ttcatttagtatcggacccaagagagtacataaatactctgctacaatataccatgagttgccatttagttaatttct |
237 |
Q |
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| T |
2506718 |
ttcatttagtgttagacccaagataatacacaaatactctgctacaatattccataaactgtcatttagttattttct |
2506641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0149 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 25936 - 25995
Alignment:
| Q |
147 |
gctcatatgattcttcatttagtatcggacccaagagagtacataaatactctgctacaa |
206 |
Q |
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| T |
25936 |
gctcacatgattcttcatttagtgtcagacccaagagagtacataaatgctctgctacaa |
25995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 22931322 - 22931250
Alignment:
| Q |
135 |
aaaatagaatgtgctcatatgattcttcatttagtatcggacccaagagagtacataaatactctgctacaat |
207 |
Q |
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| T |
22931322 |
aaaatagagtgtgctcacatgattcttcatttagttttagacccacgatagcacacaaatgctctgctacaat |
22931250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 24061419 - 24061485
Alignment:
| Q |
143 |
atgtgctcatatgattcttcatttagtatcggacccaagagagtacataaatactctgctacaatat |
209 |
Q |
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| T |
24061419 |
atgtgctcgcatgattcttcatttggtgtcagacccaagagagtccacatatgctctgctacaatat |
24061485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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