View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_low_39 (Length: 245)
Name: NF5539_low_39
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_39 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 25 - 245
Target Start/End: Complemental strand, 6871090 - 6870869
Alignment:
| Q |
25 |
ccaaacagaaaaagaattgagacaagatgagagaaaaacaagagcataatttacacaaatcaaggcgg-caccatgattttgttgaagcaccttaatgta |
123 |
Q |
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| T |
6871090 |
ccaaacagaaaaaaaattgagacaagatgagagaaaaacaagagcataatttacacaaatcatggctgtcaccatgattttgttgaagcaccttaatgta |
6870991 |
T |
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| Q |
124 |
gattttacaaaatcatcgtgatttagtcaaatttaccgccatttcatttaatgatactttcatttttctgaacaaagattgttagaattttgtatctcca |
223 |
Q |
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| T |
6870990 |
gattttacaaaatcatcgtgatttagtcaaatttaccgccatttcagttaatgatattttcatttttctgaacaaagattgttagaattttgtatctcta |
6870891 |
T |
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| Q |
224 |
tcttgtgaatgcattgaccttt |
245 |
Q |
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| T |
6870890 |
tcttgtgaatgcattgaccttt |
6870869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 6859383 - 6859246
Alignment:
| Q |
18 |
aactatcccaaacagaaaaagaattgagacaagatgagagaaaaacaagagcataatttacacaaatcaaggcggcaccatgattttgttgaagcacctt |
117 |
Q |
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||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| ||| |||||||| |||||||||||||||| |
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| T |
6859383 |
aactagcccaaacagaaaaagt-ttgagacaagataagagaaaaacaagagcataatttagacaaatcatggcatcaccatgaatttgttgaagcacctt |
6859285 |
T |
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| Q |
118 |
aatgtagattttacaaaatcatcgtgatttagtcaaatt |
156 |
Q |
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| T |
6859284 |
aatgtagattttacaaagtcaccgtgatttagtcaaatt |
6859246 |
T |
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