View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5539_low_40 (Length: 242)
Name: NF5539_low_40
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_40 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 31629367 - 31629134
Alignment:
| Q |
9 |
gaagaatattagtagtgatgatgtggtgtctattttggactcttgacacatgcaggacaccggacactctttcaacaagaaatgtccgtaacacatgtca |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31629367 |
gaagaaaattagtagtgatgatgtggtgtctattttggactcttgacacatgaaggacaccggacactctttcaacaagaaatgtccgtaacacatgtca |
31629268 |
T |
|
| Q |
109 |
ttttgattccaattacgtgatttgataattagatcattaacaaataattcttatcataaaaagtaagaaaggaagcaaaactgaccagaaaattatgata |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31629267 |
ttttgattccaattacgtaatttgataattagatcattaacaaataattcttatcataaaaagtaagaaaggaaacaaaactgaccagaaaattatgata |
31629168 |
T |
|
| Q |
209 |
taaaaatgctctaggctcccacgatacgatttga |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
31629167 |
taaaaatgctctaggctcccacgatacgatttga |
31629134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 31654359 - 31654245
Alignment:
| Q |
134 |
taattagatcattaacaaataattcttatca-taaaa---agtaagaaaggaagcaa--aactgaccagaaaattatgatataaaaatgctctaggctcc |
227 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| || ||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31654359 |
taattagatcattaacaaataatccttatcaataaaagcaagcaagaagggaaacaagaaactgacaagaaaattatgatataaaaatgctctaggctcc |
31654260 |
T |
|
| Q |
228 |
cacgatacgatttga |
242 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
31654259 |
cacgatatgatttga |
31654245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 31650828 - 31650776
Alignment:
| Q |
190 |
tgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttga |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31650828 |
tgaccagaaaattatgatataaaaatgctctaggctcccacgatatgatttga |
31650776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 31635684 - 31635631
Alignment:
| Q |
187 |
aactgaccagaaaattatgatataaaaatgctctaggctcccacgatacgattt |
240 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31635684 |
aactgaccaaaaaattatgatataaaaatactctaggctcccacgatacgattt |
31635631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 31643658 - 31643605
Alignment:
| Q |
187 |
aactgaccagaaaattatgatataaaaatgctctaggctcccacgatacgattt |
240 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31643658 |
aactaaccagaaaattatgatataaaaacgctctaggctcccacgatacgattt |
31643605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University