View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_low_41 (Length: 242)
Name: NF5539_low_41
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 33992762 - 33992531
Alignment:
| Q |
1 |
cagttactttcgccgagcttaaagtgaaggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctattgttactggtaa |
100 |
Q |
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| T |
33992762 |
cagttactttcgccgagcttaaagtgaaggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctattgttactggtaa |
33992663 |
T |
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| Q |
101 |
aggacctttggagaatcttttggatcacattgataaccctgttgccaataatgcttgggtttatgccaccaagtttgtgcccggttcttaaacatcaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33992662 |
aggacctttggagaatcttttggatcacattgataaccctgttgccaataatgcttgggtttatgccaccaagtttgtgcccggttcttaaacatcaatg |
33992563 |
T |
|
| Q |
201 |
ttatctatgattgcctttgtgtggatgatgat |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33992562 |
ttatctatgattgcctttgtgtggatgatgat |
33992531 |
T |
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Back To:
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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 3572981 - 3573076
Alignment:
| Q |
24 |
gtgaaggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctattgttactggtaaaggacctttggagaatctt |
119 |
Q |
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| T |
3572981 |
gtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatctt |
3573076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 42603120 - 42603171
Alignment:
| Q |
46 |
gattggctatgttttcaatgtttggtttctttgttcaagctattgttactgg |
97 |
Q |
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| T |
42603120 |
gattggctatgttctccatgtttggtttctttgttcaagccattgttactgg |
42603171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 38357304 - 38357392
Alignment:
| Q |
27 |
aaggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctattgttactggtaaaggacctttggagaa |
115 |
Q |
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|||||| |||| || || ||||| || ||||| || ||||| || ||||||||||| |||||||| || || || |||||||||||||| |
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| T |
38357304 |
aaggaactcaagaacggtagattagccatgttctctatgttcggattctttgttcaggctattgtgaccggaaagggacctttggagaa |
38357392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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