View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_low_42 (Length: 240)
Name: NF5539_low_42
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 38924432 - 38924292
Alignment:
| Q |
1 |
ataagaaagttttatttgtgctcaaaacatgtttcatatgcttcttaaatacaccattttaattttaataagacagttattttatttctgttgaatcaga |
100 |
Q |
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| T |
38924432 |
ataagaaagttttatttgtgctcaaaacatgtttcatatgcttcttaaatacaccatttttattttaataagacagttattttatttctgctgaatcaga |
38924333 |
T |
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| Q |
101 |
agcaatggaagacatctggaggcgttaagacatcccaacta |
141 |
Q |
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| T |
38924332 |
agcaatggaagacatttggaggcgttaagacatcccaacta |
38924292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 50565851 - 50565715
Alignment:
| Q |
1 |
ataagaaagttttatttgtgctcaaaacatgtttcatatgcttcttaaatacaccattttaattttaataagacagttattttatttctgttgaatcaga |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||||||| || | ||| | | |
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| T |
50565851 |
ataagaaagttttatttgtgctcaaaacatatttcatatgcttcttaaatacaacatttttattttaata----agttattttatttttgcttaataaaa |
50565756 |
T |
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| Q |
101 |
agcaatggaagacatctggaggcgttaagacatcccaacta |
141 |
Q |
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| T |
50565755 |
accaatggaagacattaggaggcgtcaaaacatcccaacta |
50565715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 50513673 - 50513553
Alignment:
| Q |
1 |
ataagaaagttttatttgtgctcaaaacatgtttcatatgcttcttaaatacaccattttaattttaataagacagttattttatttctgttgaatcaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||| |||||||||| ||||||||||| || | ||||| | |
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| T |
50513673 |
ataagaaagttttatttgtgctcaaaacatatttcatatgcctcttaaatacaacatttttattttaataac----ttattttatttttgcttaatcaaa |
50513578 |
T |
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| Q |
101 |
agcaatggaagacatctggaggcgt |
125 |
Q |
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|| ||||||||||||| |||||||| |
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| T |
50513577 |
agaaatggaagacatcaggaggcgt |
50513553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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