View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_low_43 (Length: 238)
Name: NF5539_low_43
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 6201086 - 6200861
Alignment:
| Q |
1 |
caagtttttattattttaattttgtatgtagatgataaagaaagcagtgaaggaattgaatgagaaaagtggctcaaccgaggaagatatctccaagttc |
100 |
Q |
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| T |
6201086 |
caagtttttattattttaattttgtatgtagatgataaagagagcagtgaaggaattgaatgagaaaagtggctcaaccgaggaagatatctccaagttc |
6200987 |
T |
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| Q |
101 |
attagaagggaatatgataatgatttgccatttgatcatgcatctattcttcatagtcgtcttaagaagttttgcatgagtggagaacttttgtgtactg |
200 |
Q |
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| T |
6200986 |
atcagaagggaatatgataatgatttgccatttgatcacgcgtttattcttcatagtcgtcttaagaagttttgcatgagtggagaacttttgtgtaccg |
6200887 |
T |
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| Q |
201 |
agaatggcaaatatgtgtttgttgat |
226 |
Q |
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| T |
6200886 |
agaatggcaaatatgtgtttgttgat |
6200861 |
T |
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Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 28 - 226
Target Start/End: Complemental strand, 43367350 - 43367152
Alignment:
| Q |
28 |
gtagatgataaagaaagcagtgaaggaattgaatgagaaaagtggctcaaccgaggaagatatctccaagttcattagaagggaatatgataatgatttg |
127 |
Q |
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| T |
43367350 |
gtagatgataaagagagcgatgaaggagttggatgagaaaagtggcttgactgaggaagcaatctccgagtttattagaaggcaatatgataaagattta |
43367251 |
T |
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| Q |
128 |
ccatttgatcatgcatctattcttcatagtcgtcttaagaagttttgcatgagtggagaacttttgtgtactgagaatggcaaatatgtgtttgttgat |
226 |
Q |
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| T |
43367250 |
ccgtttgatcatgcatctattcttcatattcatcttcagaagctttgcatgagtggagaacttttgtgcaccgagaatgagaaatatgtgtttgctgat |
43367152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 18840798 - 18840702
Alignment:
| Q |
21 |
tttgtatgtagatgataaagaaagcagtgaaggaattgaatgagaaaagtggctcaaccgaggaagatatctccaagttcattagaagggaatatga |
117 |
Q |
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||||| ||||||||||||| |||||| | ||||| |||||||| || ||||||| || |||| || ||||| | |||||||||||||||||||| |
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| T |
18840798 |
tttgtgtgtagatgataaacaaagcaatcaaggagttgaatgacgaatgtggctcgactgaggcagcaatctctgaattcattagaagggaatatga |
18840702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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