View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_low_45 (Length: 236)
Name: NF5539_low_45
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_45 |
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| [»] scaffold0041 (1 HSPs) |
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| [»] scaffold0113 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 17506990 - 17506834
Alignment:
| Q |
66 |
aattatattctcttcttcgctctcaatttctcaattctctctttaaaaacagataactttaaaaagttatcattgctgcgctgtcattatgtacattgtt |
165 |
Q |
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| T |
17506990 |
aattatattctcttcttctctctcaatttctcaattctctctttaaaaacagatatcttttaaaagttattattgctgcgctatcatcatgtacattgtt |
17506891 |
T |
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| Q |
166 |
gcgagagtaatgataaagataattggcacgtgcttttctcttgtgcggccaacgttg |
222 |
Q |
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| T |
17506890 |
gcgagagtaatgataaagataattggcacgtgcttttctcttgtgtggccaatgttg |
17506834 |
T |
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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 38083 - 38049
Alignment:
| Q |
30 |
acctatattacagaaagtaaagacctattaatcct |
64 |
Q |
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| T |
38083 |
acctatattacagagagtaaagacctattaatcct |
38049 |
T |
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Target: scaffold0113 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 28896 - 28937
Alignment:
| Q |
19 |
aaccgagaataacctatattacagaaagtaaagacctattaa |
60 |
Q |
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| T |
28896 |
aaccgaaaataacctatattacagaagataaagacctattaa |
28937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 15336867 - 15336916
Alignment:
| Q |
20 |
accgagaataacctatattacagaaagtaaagacctattaatcctgaatt |
69 |
Q |
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| T |
15336867 |
accgagaatgacctatattacagaggataaagacctattaatccttaatt |
15336916 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 23340111 - 23340159
Alignment:
| Q |
76 |
tcttcttcgctctcaatttctcaattctctctttaaaaacagataactt |
124 |
Q |
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|||||||| ||||| |||||| |||||||||||| ||||| |||||||| |
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| T |
23340111 |
tcttcttctctctcgatttctaaattctctctttgaaaacggataactt |
23340159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 23387849 - 23387801
Alignment:
| Q |
76 |
tcttcttcgctctcaatttctcaattctctctttaaaaacagataactt |
124 |
Q |
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|||||||| ||||| ||||||||||||||||||| ||||| ||| |||| |
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| T |
23387849 |
tcttcttctctctcgatttctcaattctctctttgaaaacggattactt |
23387801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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