View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_low_48 (Length: 210)
Name: NF5539_low_48
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 26453764 - 26453942
Alignment:
| Q |
15 |
aatactagcatcaacataagccattgataagttcaattttcaaaacaaaatgaagatgaatcatctcattatttgtatcttttttgctatagcaannnnn |
114 |
Q |
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| T |
26453764 |
aatactagcatcaacataagtcattgataagttcaattttcaaaataaaatgaagatgaatcatctcattatttgtatcttttttgctatagcaattttt |
26453863 |
T |
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| Q |
115 |
nnatgtaaggcttcaattgcaaagccttttctacaatctccaacacaattcctcccatcaaccttagaggaaccaattg |
193 |
Q |
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| T |
26453864 |
ttatgtaaggcttcaattgcaaagccttttctacaatctccaacacaattcctcccatcaaccttagaggaaccaattg |
26453942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 26504005 - 26504193
Alignment:
| Q |
15 |
aatactagcatcaacataagccattgataa---gttcaattttcaaaacaaaatgaagatgaatcatctcattatttgtatcttttttgctatagcaann |
111 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26504005 |
aatactaacatcaacataagccattgataataagttcaattttcaaaacaaaatgaagatgaatcatctcattatttgtatcttttttgctataacaatt |
26504104 |
T |
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| Q |
112 |
nnnnnatgta------------aggcttcaattgcaaagccttttctacaatctccaacacaattcctcccatcaaccttagaggaacc |
188 |
Q |
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| T |
26504105 |
tttttatgtaatgctgctgaggatgcttcaattgcaaagccttttctaccatctccaacacaattcctcccatcagccttggaggaacc |
26504193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 26521752 - 26521658
Alignment:
| Q |
15 |
aatactagcatcaacataagccattgataagttcaattttcaaaacaaaatgaagatgaatcatctcattatttgtatcttttttgctatagcaa |
109 |
Q |
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||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26521752 |
aatactaacatcaatataagccattgataagttcaatttttaaaacaaaatgaagatgaatcatctcattatatgtatcttttttgctatagcaa |
26521658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 26521576 - 26521647
Alignment:
| Q |
15 |
aatactagcatcaacataagccattgataagttcaattttcaaaacaaaatgaagatgaatcatctcattat |
86 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26521576 |
aatactagcattaatataagccattgataagttcaattttcaaaacaaaatgaagatgaatcatctcattat |
26521647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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