View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_low_6 (Length: 522)
Name: NF5539_low_6
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 12875693 - 12876008
Alignment:
| Q |
1 |
aatataataaaaattcacgttgagaaggtgagaagagaaagtgtgttataaactgtattgacgatgacatacatgtggtcaacaacttgctaatcaagaa |
100 |
Q |
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| T |
12875693 |
aatataataaaaattcatgttgagaaggtgagaagagaaagtgtgttataaactgtattgacgatgacatacatgtggtcaacaacttgctaatcaagaa |
12875792 |
T |
|
| Q |
101 |
ggtttaggaccattcttttgggaattaaatggccaagggtcccttttaataaggtcaacc-taatggtgcctttgatgaaaagttgtttttaagatatgt |
199 |
Q |
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| T |
12875793 |
ggtttaggaccattcttttgggaattaaatggccaagggtcccttttaataaggtcaaccttaatggtgcctttgatgaaaagttgttttaaagatatgt |
12875892 |
T |
|
| Q |
200 |
ttgagtttgtccttgagccttgtgtgatatcgtaaggcatgataaacctaccaactattagatgacttaagaataggtcaaaccaatcaataaaggttat |
299 |
Q |
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| T |
12875893 |
ttgagtttgtccttgagccttgtgtgatatcgtaaggcatgataaacctaccaactattagatgacttaagactaggtcaaaccaatcaataaaggttat |
12875992 |
T |
|
| Q |
300 |
ggtcatataaaatggt |
315 |
Q |
| |
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| T |
12875993 |
ggtcagataaaatggt |
12876008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 314 - 503
Target Start/End: Original strand, 12876081 - 12876295
Alignment:
| Q |
314 |
gtagtactattatctaaacttgaaatatgatattgcatcatatttt-ttaaaatgtcatgttaaatattaaaatagagtttaattcattgta-------- |
404 |
Q |
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| T |
12876081 |
gtagtattattatttaaacttgaaatatgatattgcatcatatttttttaaaatgtcatgttaaatattaaaatagagtttaattcattgtatgttagtt |
12876180 |
T |
|
| Q |
405 |
tgttagtttatttaatcataaatttgat----------------ttcatttgaaatatgcatttaaataaatcaatagatcgtaccatatttctaaaagg |
488 |
Q |
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| T |
12876181 |
tgttagtttatttaatcataaatttgattacttacataaatatgttcatttgaaatatgcatttaaataaatcaatagatcgtaccatatttctaaaagg |
12876280 |
T |
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| Q |
489 |
ttcagattaatgttt |
503 |
Q |
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| T |
12876281 |
ttcagattaatgttt |
12876295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 395
Target Start/End: Original strand, 36185769 - 36185802
Alignment:
| Q |
362 |
aaaatgtcatgttaaatattaaaatagagtttaa |
395 |
Q |
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| T |
36185769 |
aaaatgtcatgttaaatattaaaataaagtttaa |
36185802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 397
Target Start/End: Original strand, 39722058 - 39722100
Alignment:
| Q |
355 |
attttttaaaatgtcatgttaaatattaaaatagagtttaatt |
397 |
Q |
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|
| T |
39722058 |
attttctaaaatgtcatcttaaatatcaaaatagagtttaatt |
39722100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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