View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5539_low_9 (Length: 455)

Name: NF5539_low_9
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5539_low_9
NF5539_low_9
[»] chr4 (6 HSPs)
chr4 (4-364)||(22572396-22572755)
chr4 (268-313)||(17912832-17912877)
chr4 (375-433)||(22572320-22572378)
chr4 (277-313)||(46676709-46676745)
chr4 (262-326)||(39778346-39778411)
chr4 (262-323)||(49190155-49190215)
[»] chr7 (3 HSPs)
chr7 (268-329)||(39079909-39079969)
chr7 (268-313)||(14596161-14596206)
chr7 (268-313)||(16015689-16015734)
[»] chr5 (2 HSPs)
chr5 (268-325)||(15844493-15844549)
chr5 (285-331)||(22198986-22199031)
[»] chr8 (2 HSPs)
chr8 (284-336)||(6865200-6865252)
chr8 (262-298)||(21662785-21662821)
[»] chr3 (2 HSPs)
chr3 (262-311)||(35018533-35018583)
chr3 (267-313)||(54861616-54861662)
[»] chr1 (6 HSPs)
chr1 (285-331)||(21641405-21641450)
chr1 (268-329)||(19810979-19811039)
chr1 (269-326)||(39007164-39007221)
chr1 (261-302)||(40188668-40188709)
chr1 (268-313)||(41590508-41590552)
chr1 (285-329)||(36470124-36470168)
[»] chr2 (2 HSPs)
chr2 (268-325)||(3185935-3185992)
chr2 (285-326)||(11064262-11064303)


Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 4 - 364
Target Start/End: Complemental strand, 22572755 - 22572396
Alignment:
Q  4 atgtcgaagaatatgtgtggtgagtagctacacgtttgttgagatttaatggaaacaagccatctctcttgacaatggtggaccatgatgattgagnnnn 103  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  22572755 atgttgaaaaatatgtgtggtgagtagctacacgtttgttgagatttaatggaaacaagccatctctcttgacaatggtggaccatgatgattgagaaaa 22572656  T
Q  104 nnncaagtcaataatggaaaaagataatgcccaaaagaataattatgaagagtgtgaccaccaattatttgtgtaaggctgaattaagttcaatatctaa 203  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22572655 aaccaagtcaataatggaaaaagataatgcccaaaagaataattatgaagagtgtgac-accaattatttgtgtaaggctgaattaagttcaatatctaa 22572557  T
Q  204 taataacttattgcttttgaaaaatatatgacacaaatttagttagcaggactaataaatcttagataggctctgatatcatcttaaaatttgggttggt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22572556 taataacttattgcttttgaaaaatatatgacacaaatttagttaacaggactaataaatcttagataggctctgatatcatcttaaattttgggttggt 22572457  T
Q  304 cctaactcaaatcttacaaaaccggcctttaaaatgggtattaccttcatttttaatcaca 364  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  22572456 cctaactcaactcttacaaaaccggcctttaaaatgggtattgccttcatttataatcaca 22572396  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 17912877 - 17912832
Alignment:
Q  268 gataggctctgatatcatcttaaaatttgggttggtcctaactcaa 313  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||||    
T  17912877 gataggctctcataccatcttaaaatttgggttgggcctaactcaa 17912832  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 433
Target Start/End: Complemental strand, 22572378 - 22572320
Alignment:
Q  375 actcaatgtgggactcttaacggttatannnnnnncctttcgaataatacataattggt 433  Q
    |||||||| |||||||||||||||||||       ||||||||||||||||||||||||    
T  22572378 actcaatgcgggactcttaacggttatatttttttcctttcgaataatacataattggt 22572320  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 46676745 - 46676709
Alignment:
Q  277 tgatatcatcttaaaatttgggttggtcctaactcaa 313  Q
    |||||||||||||||||||||||||| ||||||||||    
T  46676745 tgatatcatcttaaaatttgggttggacctaactcaa 46676709  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 39778346 - 39778411
Alignment:
Q  262 atcttagataggctctgatatcatcttaaaattt-gggttggtcctaactcaaatcttacaaaacc 326  Q
    ||||| |||| ||||||||| || |||||||||| ||||||| ||||||||||  |||||||||||    
T  39778346 atcttggatatgctctgataccagcttaaaattttgggttgggcctaactcaacccttacaaaacc 39778411  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 49190155 - 49190215
Alignment:
Q  262 atcttagataggctctgatatcatcttaaaatttgggttggtcctaactcaaatcttacaaa 323  Q
    ||||| |||||||||||||| ||||||| |||||||||||  || ||||| |||||||||||    
T  49190155 atcttggataggctctgataccatcttagaatttgggttgagccaaactc-aatcttacaaa 49190215  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 39079909 - 39079969
Alignment:
Q  268 gataggctctgatatcatcttaaaatttgggttggtcctaactcaaatcttacaaaaccggc 329  Q
    |||||||||||||  |||||||||||||||||||| ||||||| ||| ||||||||||||||    
T  39079909 gataggctctgatgccatcttaaaatttgggttgggcctaact-aaaccttacaaaaccggc 39079969  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 14596161 - 14596206
Alignment:
Q  268 gataggctctgatatcatcttaaaatttgggttggtcctaactcaa 313  Q
    |||||||||| ||||||||||||||||| | |||| ||||||||||    
T  14596161 gataggctctaatatcatcttaaaattttgattgggcctaactcaa 14596206  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 16015689 - 16015734
Alignment:
Q  268 gataggctctgatatcatcttaaaatttgggttggtcctaactcaa 313  Q
    |||||||||| ||||||||||||||||| | |||| ||||||||||    
T  16015689 gataggctctaatatcatcttaaaattttgattgggcctaactcaa 16015734  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 15844493 - 15844549
Alignment:
Q  268 gataggctctgatatcatcttaaaatttgggttggtcctaactcaaatcttacaaaac 325  Q
    |||||||||||| | |||||||||||||||||||| |||||||| |||||||||||||    
T  15844493 gataggctctgacaccatcttaaaatttgggttgggcctaactc-aatcttacaaaac 15844549  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 22198986 - 22199031
Alignment:
Q  285 tcttaaaatttgggttggtcctaactcaaatcttacaaaaccggcct 331  Q
    |||||||||||||||||| |||||||| || ||||||||||||||||    
T  22198986 tcttaaaatttgggttgggcctaactc-aaccttacaaaaccggcct 22199031  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 6865200 - 6865252
Alignment:
Q  284 atcttaaaatttgggttggtcctaactcaaatcttacaaaaccggcctttaaa 336  Q
    ||||||||||||||||||| | ||||||||  |||||||||||||| ||||||    
T  6865200 atcttaaaatttgggttgggcttaactcaacccttacaaaaccggcttttaaa 6865252  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 21662821 - 21662785
Alignment:
Q  262 atcttagataggctctgatatcatcttaaaatttggg 298  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  21662821 atcttggataggctctgatattatcttaaaatttggg 21662785  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 35018583 - 35018533
Alignment:
Q  262 atcttagataggctctgatatcatcttaaaatttg-ggttggtcctaactc 311  Q
    ||||| |||||||||||||||||||||| |||||| |||||| ||||||||    
T  35018583 atcttggataggctctgatatcatcttagaatttgtggttgggcctaactc 35018533  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 54861662 - 54861616
Alignment:
Q  267 agataggctctgatatcatcttaaaatttgggttggtcctaactcaa 313  Q
    ||||||||||| ||| |||||||||||||||||||| | ||||||||    
T  54861662 agataggctctcataccatcttaaaatttgggttgggcgtaactcaa 54861616  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 21641405 - 21641450
Alignment:
Q  285 tcttaaaatttgggttggtcctaactcaaatcttacaaaaccggcct 331  Q
    |||||||||||||||||| |||||||| || ||||||||||||||||    
T  21641405 tcttaaaatttgggttgggcctaactc-aaccttacaaaaccggcct 21641450  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 19810979 - 19811039
Alignment:
Q  268 gataggctctgatatcatcttaaaatttgggttggtcctaactcaaatcttacaaaaccggc 329  Q
    ||||| |||||||| |||||||||||||||||| | ||||| || || ||||||||||||||    
T  19810979 gatagtctctgataccatcttaaaatttgggttcggcctaagtc-aaccttacaaaaccggc 19811039  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 326
Target Start/End: Complemental strand, 39007221 - 39007164
Alignment:
Q  269 ataggctctgatatcatcttaaaatttgggttggtcctaactcaaatcttacaaaacc 326  Q
    |||||||| |||| ||||||| ||||||||| |||||||||||||   ||||||||||    
T  39007221 ataggctccgataccatcttagaatttgggtaggtcctaactcaacatttacaaaacc 39007164  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 40188668 - 40188709
Alignment:
Q  261 aatcttagataggctctgatatcatcttaaaatttgggttgg 302  Q
    |||||| |||||||||||| | ||||||||||||||||||||    
T  40188668 aatcttggataggctctgacaccatcttaaaatttgggttgg 40188709  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 41590508 - 41590552
Alignment:
Q  268 gataggctctgatatcatcttaaaatttgggttggtcctaactcaa 313  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||    
T  41590508 gataggctctgataccatcttagaatttgggttgg-cctaactcaa 41590552  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 36470124 - 36470168
Alignment:
Q  285 tcttaaaatttgggttggtcctaactcaaatcttacaaaaccggc 329  Q
    ||||| |||||||||||||||||||||||  ||| ||||||||||    
T  36470124 tcttagaatttgggttggtcctaactcaacccttgcaaaaccggc 36470168  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 3185992 - 3185935
Alignment:
Q  268 gataggctctgatatcatcttaaaatttgggttggtcctaactcaaatcttacaaaac 325  Q
    |||||||||||||| ||||||||||||||||| |   ||||||||| || ||||||||    
T  3185992 gataggctctgataccatcttaaaatttgggtcgagtctaactcaactcctacaaaac 3185935  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 11064262 - 11064303
Alignment:
Q  285 tcttaaaatttgggttggtcctaactcaaatcttacaaaacc 326  Q
    ||||| |||||||||||| |||||||||| ||||||||||||    
T  11064262 tcttagaatttgggttgggcctaactcaactcttacaaaacc 11064303  T

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