View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5540-Insertion-1 (Length: 1114)
Name: NF5540-Insertion-1
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5540-Insertion-1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 658; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 8 - 950
Target Start/End: Original strand, 493813 - 494721
Alignment:
| Q |
8 |
gcagcctcactaattatctctctcaatgttacaccgctctctaccgtcattctcaacaatttgacatcgactttcaacacacggttgagattttttgtgc |
107 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
493813 |
gcagcctcactgattatctctctcaatgttacaccgctctctaccgtcattctcaacaatttgacatcgactttcaacacacggttgagattttttgtgc |
493912 |
T |
|
| Q |
108 |
ttattagaagtccattatcatcgggacaagctagttttggtatgctgtgagagaagcgcgttgcaactttcacttttctgctgttttttgaagctaacgc |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
493913 |
ttattagaagtccattatcatcgggacaagctagttttggtatgctgtgagagaagcgcgttgcaactttcacttttctgttgttttttgaagctaacgc |
494012 |
T |
|
| Q |
208 |
gactattgatataagctccgtctcagtggttgggtacataacctcgctagctctgcaaatgcttcgatcgggaaacacgccatttgaattggtgatggtg |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
494013 |
gactattgatataagctccgcctcagtggttgggtacataacctcgctagctctgcaaatgcttcgatcggggaacacgccatttgaattggtgatggtg |
494112 |
T |
|
| Q |
308 |
cagtttgtattatttgatgaacattgaattggatctgctggaggagttgaaattactccatatattataaataggaagataaaaatagtggacttgaatt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494113 |
cagtttgtattatttgatgaacattgaattggatctgctggaggagttgaaattactccatatattataaataggaagataaaaatagtggacttgaatt |
494212 |
T |
|
| Q |
408 |
ctagttttctcatgatattagagaatatcattaacattgtctagctatagttgatatt--ttatctatctctatgatcttctatgtgctatttataaaac |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
494213 |
ctagttttctcatgatattagagaatatcattaacattgtctagctatagttgatatttcttatctatctctatgatcttctatgtgctatttataaaac |
494312 |
T |
|
| Q |
506 |
gaatgtaatattgtggtccatgtattgcttcaagaaaataatattctaaagtaccgtgtttttgttagcttagtgattgataatggctaagcttaagatc |
605 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||||||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
494313 |
gaatgtaatattgttgtccatgtcttgcttaaagaaaatagtattctaaag----------------------tgattgataatggctaa------gatc |
494384 |
T |
|
| Q |
606 |
aagggtgagctatagccctagctcaattttattag-------atttatatatacatacatgcataactcgagcattgacttctaataataaatattgagt |
698 |
Q |
| |
|
|||||| | |||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| |
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|
| T |
494385 |
aagggtcaactatag-cctacctcaattttattagattttagatttatatatacatacatgcataaatcgagcattgacttctaataataaacatcgagt |
494483 |
T |
|
| Q |
699 |
catgggtaacatggtgactagaaaagcaaaaataataacataggtattgattaatgacaaatttatttttatccaactcagctgttcatgataccatatc |
798 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
494484 |
catgagtaacatgaggactagaaaagcaaaaataataacata-gtattgattaatgacaaatttgtttttatccaactcagctgttcatgataccatatc |
494582 |
T |
|
| Q |
799 |
atcaaaaacaagtggactgaaaaaatattagtattacatatcataatccatgcttcatttcttatggaagaatgtactattagaaatatagtggatgtag |
898 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | | ||| |
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|
| T |
494583 |
atcaaaaacaagtggactgaaaaaatattagaattacatatcataatccatgcttcatttcttatggaagaatg---tattaaaca-----------tag |
494668 |
T |
|
| Q |
899 |
tagaggcctagcggagactgaaatttcacatgta-tttttacattccatcact |
950 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
494669 |
tagaggcctagcggagactgaaatttcacatgtattttttaaattccatcact |
494721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 8 - 404
Target Start/End: Complemental strand, 49013752 - 49013347
Alignment:
| Q |
8 |
gcagcctcactaattatctctctcaatgttacaccgctctctaccgtcattctcaacaatttgacatcgactttcaacacacggttgagattttttgtgc |
107 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||| |||||||| | ||| ||| | ||||| | |||||||||| ||||||| |||||||| |
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|
| T |
49013752 |
gcagcctcactaatgatctgtctcaatgtcacaccactctctacacttattgtcattgcatccacatcaattttcaacacattgttgagaaattttgtgc |
49013653 |
T |
|
| Q |
108 |
ttattagaagtccatt---------atcatcgggacaagctagttttggtatgctgtgagagaagcgcgttgcaactttcacttttctgctgttttttga |
198 |
Q |
| |
|
||| ||||||||||| |||||| ||||||| ||| ||||| |||||||| ||||||||||| |||||||||| ||||||| |||||| ||| |
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|
| T |
49013652 |
ttaccagaagtccattttgggtatcatcatcaggacaagttagctttggaatgctgtgggagaagcgcgtcgcaactttcatttttctgttgttttctga |
49013553 |
T |
|
| Q |
199 |
agctaacgcgactattgatataagctccgtctcagtggttgggtacataacctcgctagctctgcaaatgcttcgatcgggaaacacgccatttgaattg |
298 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | |||||| |||| ||||||||||||| ||||||||||| | || || ||| ||||||| ||||| |
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|
| T |
49013552 |
agctaacgcgactattgatataagctctacctctgaggttggatacacaacctcgctagctttgcaaatgctttggtcagggaacgcgccattggaattc |
49013453 |
T |
|
| Q |
299 |
gtgatggtgcagtttgtattatttgatgaacattgaattggatctgctggaggagttgaaattactccatatattataaataggaagataaaaatagtgg |
398 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||||| |||| || || |||||||| | |||| |
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|
| T |
49013452 |
gtgatggtgcagtttgtgttatttgatgaacatttaattggatcttctggaggagttgaaatcactccatagattacaaggagaaagataaagagagtga |
49013353 |
T |
|
| Q |
399 |
acttga |
404 |
Q |
| |
|
|||||| |
|
|
| T |
49013352 |
acttga |
49013347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 962 - 1022
Target Start/End: Original strand, 10979533 - 10979595
Alignment:
| Q |
962 |
ggaatagaatcaaataagaaatttgagctcaaatcc-aaacttc-agcaaagatagccgatga |
1022 |
Q |
| |
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||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||| |||| |
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|
| T |
10979533 |
ggaatagaaccaaataagaaatttgaactcaaatccaaaacttcaagcaaagatagcctatga |
10979595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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