View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5540-Insertion-10 (Length: 600)

Name: NF5540-Insertion-10
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5540-Insertion-10
NF5540-Insertion-10
[»] chr5 (11 HSPs)
chr5 (181-598)||(26797845-26798260)
chr5 (65-234)||(26824741-26824909)
chr5 (340-529)||(26825732-26825930)
chr5 (65-234)||(26802164-26802332)
chr5 (65-234)||(26809714-26809882)
chr5 (218-355)||(26802476-26802614)
chr5 (218-355)||(26810026-26810164)
chr5 (218-355)||(26825053-26825191)
chr5 (8-66)||(26801847-26801905)
chr5 (8-66)||(26809397-26809455)
chr5 (8-66)||(26824424-26824482)
[»] chr3 (24 HSPs)
chr3 (181-598)||(10218374-10218789)
chr3 (65-355)||(10107710-10108001)
chr3 (64-355)||(9997937-9998229)
chr3 (65-355)||(10232543-10232833)
chr3 (8-378)||(10376828-10377197)
chr3 (344-540)||(10108543-10108748)
chr3 (340-540)||(9998773-9998968)
chr3 (340-529)||(10229778-10229976)
chr3 (65-234)||(10228787-10228955)
chr3 (344-540)||(10233377-10233582)
chr3 (98-378)||(10364768-10365049)
chr3 (218-355)||(10229099-10229237)
chr3 (342-446)||(10439597-10439701)
chr3 (8-66)||(10228470-10228528)
chr3 (196-301)||(11767515-11767620)
chr3 (8-66)||(9997621-9997679)
chr3 (8-66)||(10106125-10106183)
chr3 (8-66)||(10232226-10232284)
chr3 (346-412)||(11767636-11767702)
chr3 (540-598)||(10018145-10018204)
chr3 (540-598)||(10255639-10255698)
chr3 (8-47)||(10365156-10365195)
chr3 (540-598)||(10118590-10118649)
chr3 (354-432)||(10499709-10499788)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 181 - 598
Target Start/End: Original strand, 26797845 - 26798260
Alignment:
Q  181 tttgagtttatatcgatcaagtcattatctcagcagtaaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttc 280  Q
    ||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26797845 tttgagtttatatcgatcaagtcattatctca------------aagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttc 26797932  T
Q  281 gaacaattttaaaatactagttgatccacagtcgactatatataaaaatgttccacgataaaatttatcattcaaacttcaaagatgccaattgctttta 380  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| | |||||||||||||||||| ||||||||||||||||||||||    
T  26797933 gaacaattttaaaatactagtcgatccacagtcgactatatattgaaatgttccacaaaaaaatttatcattcaaac-tcaaagatgccaattgctttta 26798031  T
Q  381 aagtgtgcaactattctttgtatatctattattttgtctgatatgggtccattaacaagcattatttcattcacatg-------tgagtcttt--acatg 471  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       | | | | |  |||||    
T  26798032 aagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccattaacaagcattatttcattcacatgctcttaattactatatgcacatg 26798131  T
Q  472 ctaatatcctctcgagtcttaactccttaattgcattcatatagctcttacttccaatcatttatataattcaatctcca-cgctcttaattacc-tcta 569  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||| || |    
T  26798132 ctaatatcctctcgagtctttactccttaattgcattcatatagctcttacttccaatcatttctataattcaatctccatagctcttaattaccttcaa 26798231  T
Q  570 aaattttgctatttacgtgtgcaacttta 598  Q
    ||| ||| |||||||||||||||||||||    
T  26798232 aaagttttctatttacgtgtgcaacttta 26798260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 26824741 - 26824909
Alignment:
Q  65 tatattaataggaaagaggtggccctcaattattatcattgggtccagcagttcagcttcattttgaatagccaaggggaaaataaatttaaggactaat 164  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26824741 tatattaataggaaagaggtggccctcaattattatcattgggttcagcagttcagcttcattttgaatagccaaggggaaaataaatttaaggactaat 26824840  T
Q  165 ttaattctcttttttgtttgagtttatatcgatcaagtcattatctcagcagtaaagataaagagaatcg 234  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26824841 ttaattctctttttt-tttgagtttatatcgatcaagtcattatctcagcagtaaagacaaagagaatcg 26824909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 340 - 529
Target Start/End: Original strand, 26825732 - 26825930
Alignment:
Q  340 aaaatttatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattctttgtatatctattattttgtctgatatgggtccattaacaag 439  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26825732 aaaaattatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccattaacaag 26825831  T
Q  440 cattatttcattcacatgtgagtcttt---------acatgctaatatcctctcgagtcttaactccttaattgcattcatatagctcttacttccaat 529  Q
    ||||||||||||||||| |||||||||         |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26825832 cattatttcattcacatatgagtctttactatatgcacatgctaatatcctctcgagtcttaactccttaattgcattcacatagctcttacttccaat 26825930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 26802164 - 26802332
Alignment:
Q  65 tatattaataggaaagaggtggccctcaattattatcattgggtccagcagttcagcttcattttgaatagccaaggggaaaataaatttaaggactaat 164  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26802164 tatattaataggaaagaggtggccctcaattattatcattgggttcagcagttcagcttcattttgaatagccaaggggaaaagaaatttaaggactaat 26802263  T
Q  165 ttaattctcttttttgtttgagtttatatcgatcaagtcattatctcagcagtaaagataaagagaatcg 234  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26802264 ttaattctctttttt-tttgagtttatatcgatcaagtcattatctcagcagtaaagacaaagagaatcg 26802332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 26809714 - 26809882
Alignment:
Q  65 tatattaataggaaagaggtggccctcaattattatcattgggtccagcagttcagcttcattttgaatagccaaggggaaaataaatttaaggactaat 164  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26809714 tatattaataggaaagaggtggccctcaattattatcattgggttcagcagttcagcttcattttgaatagccaaggggaaaagaaatttaaggactaat 26809813  T
Q  165 ttaattctcttttttgtttgagtttatatcgatcaagtcattatctcagcagtaaagataaagagaatcg 234  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26809814 ttaattctctttttt-tttgagtttatatcgatcaagtcattatctcagcagtaaagacaaagagaatcg 26809882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 218 - 355
Target Start/End: Original strand, 26802476 - 26802614
Alignment:
Q  218 aaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaatactagttgatccacagtc-gac 316  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  26802476 aaagacaaagagaatcgtaaacttctatttctaaaacccaataactatggtcattagagtttcgaacaattttaaaatactagtcgatccacagtcagac 26802575  T
Q  317 tatatataaaaatgttccacgataaaatttatcattcaa 355  Q
    |||||||  ||||||||||| ||||||||||||||||||    
T  26802576 tatatattgaaatgttccacaataaaatttatcattcaa 26802614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 218 - 355
Target Start/End: Original strand, 26810026 - 26810164
Alignment:
Q  218 aaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaatactagttgatccacagtc-gac 316  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  26810026 aaagacaaagagaatcgtaaacttctatttctaaaacccaataactatggtcattagagtttcgaacaattttaaaatactagtcgatccacagtcagac 26810125  T
Q  317 tatatataaaaatgttccacgataaaatttatcattcaa 355  Q
    |||||||  ||||||||||| ||||||||||||||||||    
T  26810126 tatatattgaaatgttccacaataaaatttatcattcaa 26810164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 218 - 355
Target Start/End: Original strand, 26825053 - 26825191
Alignment:
Q  218 aaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaatactagttgatccacagtc-gac 316  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  26825053 aaagacaaagagaatcgtaaacttttatttctaaaacccaataactatggtcattagagtttcgaacaattttaaaatactagtcgatccacagtcagac 26825152  T
Q  317 tatatataaaaatgttccacgataaaatttatcattcaa 355  Q
    |||||||  ||||||||||| ||||||||||||||||||    
T  26825153 tatatattgaaatgttccacaataaaatttatcattcaa 26825191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 26801847 - 26801905
Alignment:
Q  8 cattcatcaatgacttgttactgatgataacatattgttctaaatattcttaaatgata 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26801847 cattcatcaatgacttgttactgatgataacatattgttctaaatattcttaaatgata 26801905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 26809397 - 26809455
Alignment:
Q  8 cattcatcaatgacttgttactgatgataacatattgttctaaatattcttaaatgata 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26809397 cattcatcaatgacttgttactgatgataacatattgttctaaatattcttaaatgata 26809455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 26824424 - 26824482
Alignment:
Q  8 cattcatcaatgacttgttactgatgataacatattgttctaaatattcttaaatgata 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26824424 cattcatcaatgacttgttactgatgataacatattgttctaaatatccttaaatgata 26824482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 181 - 598
Target Start/End: Original strand, 10218374 - 10218789
Alignment:
Q  181 tttgagtttatatcgatcaagtcattatctcagcagtaaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttc 280  Q
    ||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218374 tttgagtttatatcgatcaagtcattatctca------------aagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttc 10218461  T
Q  281 gaacaattttaaaatactagttgatccacagtcgactatatataaaaatgttccacgataaaatttatcattcaaacttcaaagatgccaattgctttta 380  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| | |||||||||||||||||| ||||||||||||||||||||||    
T  10218462 gaacaattttaaaatactagtcgatccacagtcgactatatattgaaatgttccacaaaaaaatttatcattcaaac-tcaaagatgccaattgctttta 10218560  T
Q  381 aagtgtgcaactattctttgtatatctattattttgtctgatatgggtccattaacaagcattatttcattcacatg-------tgagtcttt--acatg 471  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||       | | | | |  |||||    
T  10218561 aagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccaataacaagcattatttcattcacatgctcttaattactatatgcacatg 10218660  T
Q  472 ctaatatcctctcgagtcttaactccttaattgcattcatatagctcttacttccaatcatttatataattcaatctcca-cgctcttaattacc-tcta 569  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||| || |    
T  10218661 ctaatatcctctcgagtctttactccttaattgcattcatatagctcttacttccaatcatttctataattcaatctccatagctcttaattaccttcaa 10218760  T
Q  570 aaattttgctatttacgtgtgcaacttta 598  Q
    ||| ||| |||||||||||||||||||||    
T  10218761 aaagttttctatttacgtgtgcaacttta 10218789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 65 - 355
Target Start/End: Original strand, 10107710 - 10108001
Alignment:
Q  65 tatattaataggaaagaggtggccctcaattattatcattgggtccagcagttcagcttcattttgaatagccaaggggaaaataaatttaaggactaat 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10107710 tatattaataggaaagaggtggccctcaattattatcattgggtccagcagttcagcttcattttgaatagccaaggggaaaataaatttaaggactaat 10107809  T
Q  165 ttaattctcttttttgtttgagtttatatcgatcaagtcattatctcagcagtaaagataaagagaatcgtaaacttctatttctaaaagccaataacta 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||    
T  10107810 ttaattctcttttttgtttgagtttatatcgatcaagtcattatctcagcagtaaagacaaagagaatcgtaaacttttatttctaaaacccaataacta 10107909  T
Q  265 tggtcattagagtttcgaacaattttaaaatactagttgatccacagtc-gactatatataaaaatgttccacgataaaatttatcattcaa 355  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||  ||||||||||| ||||||||||||||||||    
T  10107910 tggtcattagagtttcgaacaattttaaaatactagtcgatccacagtcagactatatattgaaatgttccacaataaaatttatcattcaa 10108001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 64 - 355
Target Start/End: Original strand, 9997937 - 9998229
Alignment:
Q  64 atatattaataggaaagaggtggccctcaattattatcattgggtccagcagttcagcttcattttgaatagccaaggggaaaataaatttaaggactaa 163  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9997937 atatattaatagaaaagaggtggccctcaattactatcattgggtccagcagttcagcttcattttgaatagccaaggggaaaataaatttaaggactaa 9998036  T
Q  164 tttaattctcttttttgtttgagtttatatcgatcaagtcattatctcagcagtaaagataaagagaatcgtaaacttctatttctaaaagccaataact 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||    
T  9998037 tttaattctcttttttgtttgagtttatatcgatcaagtcattatctcagcagtaaagacaaagagaatcgtaaacttttatttctaaaacccaataact 9998136  T
Q  264 atggtcattagagtttcgaacaattttaaaatactagttgatccacagtc-gactatatataaaaatgttccacgataaaatttatcattcaa 355  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||  ||||||||||| ||||||||||||||||||    
T  9998137 atggtcattagagtttcgaacaattttaaaatactagtcgatccacagtcagactatatattgaaatgttccacaataaaatttatcattcaa 9998229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 65 - 355
Target Start/End: Original strand, 10232543 - 10232833
Alignment:
Q  65 tatattaataggaaagaggtggccctcaattattatcattgggtccagcagttcagcttcattttgaatagccaaggggaaaataaatttaaggactaat 164  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10232543 tatattaataggaaagaggttgccctcaattattatcattgggtccagcagttcagcttcattttgaatagccaaggggaaaataaatttaaggactaat 10232642  T
Q  165 ttaattctcttttttgtttgagtttatatcgatcaagtcattatctcagcagtaaagataaagagaatcgtaaacttctatttctaaaagccaataacta 264  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  10232643 ttaattct-ttttttgtttgagtttatatcgatcaagtcattatctcagcagtaaagacaaagagaatcgtaaacttctatttctaaaacccaataacta 10232741  T
Q  265 tggtcattagagtttcgaacaattttaaaatactagttgatccacag-tcgactatatataaaaatgttccacgataaaatttatcattcaa 355  Q
    ||||||||||||||| ||||||||||||||||||||  |||||| || | ||||||||||  ||||||||||| ||||||||||||||||||    
T  10232742 tggtcattagagttttgaacaattttaaaatactagccgatccatagttagactatatattgaaatgttccacaataaaatttatcattcaa 10232833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 10377197 - 10376828
Alignment:
Q  8 cattcatcaatgacttgttactgatgataacatattgttctaaatattcttaaatgatatattaataggaaagaggtggccctcaattattatcattggg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  10377197 cattcatcaatgacttgttactgatgataacatattgttctaaatatccttaaatgatat--taataggaaagaggtggccctcaattattatcattggg 10377100  T
Q  108 tccagcagttcagcttcattttgaatagccaaggggaaaataaatttaa-ggactaatttaattctcttttttgtttgagtttatatcgatcaagtcatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||  ||||||||||||| |||||| | | ||||||||||| |    
T  10377099 tccagcagttcagcttcattttgaatagccaaggggaaaataaatttattggactaatttcgttctcttttttgtctgagttaacaccgatcaagtcact 10377000  T
Q  207 atctcagcagtaaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaatactagttgatc 306  Q
     ||| ||| |  | || |||||||||| ||| |||||||||||||||||||||||||||  |||||| |||||| ||||||||| |||||||||||||||    
T  10376999 gtcttagcggcgaggacaaagagaatcataagcttctatttctaaaagccaataactatcatcattaaagtttcaaacaattttcaaatactagttgatc 10376900  T
Q  307 cacagtcgactatatataaaaatgttccacgataaaatttatcattcaaacttcaaagatgccaattgcttt 378  Q
    |||| ||||||||||||  ||||| |||||  || |||||||||||||||||||||||||||||||| ||||    
T  10376899 cacaatcgactatatattgaaatggtccacagtagaatttatcattcaaacttcaaagatgccaattccttt 10376828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 344 - 540
Target Start/End: Original strand, 10108543 - 10108748
Alignment:
Q  344 tttatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattctttgtatatctattattttgtctgatatgggtccattaacaagcatt 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10108543 tttatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccattaacaagcatt 10108642  T
Q  444 atttcattcacatgtgagtcttt---------acatgctaatatcctctcgagtcttaactccttaattgcattcatatagctcttacttccaatcattt 534  Q
    ||||||||||||| |||||||||         |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10108643 atttcattcacatatgagtctttactatatgcacatgctaatatcctctcgagtcttaactccttaattgcattcacatagctcttacttccaatcattt 10108742  T
Q  535 atataa 540  Q
     |||||    
T  10108743 ctataa 10108748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 340 - 540
Target Start/End: Original strand, 9998773 - 9998968
Alignment:
Q  340 aaaatttatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattctttgtatatctattattttgtctgatatgggtccattaacaag 439  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9998773 aaaaattatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccattaacaag 9998872  T
Q  440 cattatttcattcacatgtgagtctttacatgctaatatcctctcgagtcttaactccttaattgcattcatatagctcttacttccaatcatttatata 539  Q
    ||||||||||||||||| |||||||||||      |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  9998873 cattatttcattcacatatgagtctttac-----tatatcctctcgagtcttaactccttaattgcattcacatagctcttacttccaatcatttctata 9998967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 340 - 529
Target Start/End: Original strand, 10229778 - 10229976
Alignment:
Q  340 aaaatttatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattctttgtatatctattattttgtctgatatgggtccattaacaag 439  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10229778 aaaaattatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccattaacaag 10229877  T
Q  440 cattatttcattcacatgtgagtcttt---------acatgctaatatcctctcgagtcttaactccttaattgcattcatatagctcttacttccaat 529  Q
    ||||||||||||||||| |||||||||         |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10229878 cattatttcattcacatatgagtctttactatatgcacatgctaatatcctctcgagtcttaactccttaattgcattcacatagctcttacttccaat 10229976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 10228787 - 10228955
Alignment:
Q  65 tatattaataggaaagaggtggccctcaattattatcattgggtccagcagttcagcttcattttgaatagccaaggggaaaataaatttaaggactaat 164  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10228787 tatattaataggaaagaggtggccctcaattattatcattgggttcagcagttcagcttcattttgaatagccaaggggaaaagaaatttaaggactaat 10228886  T
Q  165 ttaattctcttttttgtttgagtttatatcgatcaagtcattatctcagcagtaaagataaagagaatcg 234  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10228887 ttaattctctttttt-tttgagtttatatcgatcaagtcattatctcagcagtaaagacaaagagaatcg 10228955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 344 - 540
Target Start/End: Original strand, 10233377 - 10233582
Alignment:
Q  344 tttatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattctttgtatatctattattttgtctgatatgggtccattaacaagcatt 443  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  10233377 tttatcattcaaacttcaaaaatgccaattgcttttaaagtgtgcaactattctttgtatatctattattttttctgatgtgggtccattaacaagcatt 10233476  T
Q  444 atttcattcacatgtgagtcttt---------acatgctaatatcctctcgagtcttaactccttaattgcattcatatagctcttacttccaatcattt 534  Q
    ||||||||||||| |||||||||         |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10233477 atttcattcacatatgagtctttactatatgcacatgctaatatcctctcgagtcttaactccttaattgcattcacatagctcttacttccaatcattt 10233576  T
Q  535 atataa 540  Q
     |||||    
T  10233577 ctataa 10233582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 98 - 378
Target Start/End: Complemental strand, 10365049 - 10364768
Alignment:
Q  98 tatcattgggtccagcagttcagcttcattttgaatagccaaggggaaaataaatttaa-ggactaatttaattctcttttttgtttgagtttatatcga 196  Q
    ||||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||||| ||||||||||  ||||||||||||   ||||| | | |||    
T  10365049 tatcaatgggtccagcacttcagcttcattttgaagagtcaaggagaaaataaatttaaaggactaatttcgttctcttttttggccgagttaacaccga 10364950  T
Q  197 tcaagtcattatctcagcagtaaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaata 296  Q
    |||||||| | ||| ||| || | || |||||||||||||| |||||||||||||| ||||||||||||  ||||||||||||| ||||||||| |||||    
T  10364949 tcaagtcactgtcttagcggtgaggacaaagagaatcgtaagcttctatttctaaacgccaataactatcatcattagagtttctaacaattttcaaata 10364850  T
Q  297 ctagttgatccacagtcgactatatataaaaatgttccacgataaaatttatcattcaaacttcaaagatgccaattgcttt 378  Q
    |||||||||||||| |||| |||||||  ||||| || ||  || |||||||||||||||||||||||||||||||||||||    
T  10364849 ctagttgatccacaatcgagtatatattgaaatggtctacagtagaatttatcattcaaacttcaaagatgccaattgcttt 10364768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 218 - 355
Target Start/End: Original strand, 10229099 - 10229237
Alignment:
Q  218 aaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaatactagttgatccacagtc-gac 316  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  10229099 aaagacaaagagaatcgtaaacttctatttctaaaacccaataactatggtcattagagtttcgaacaattttaaaatactagtcgatccacagtcagac 10229198  T
Q  317 tatatataaaaatgttccacgataaaatttatcattcaa 355  Q
    |||||||  ||||||||||| ||||||||||||||||||    
T  10229199 tatatattgaaatgttccacaataaaatttatcattcaa 10229237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 342 - 446
Target Start/End: Original strand, 10439597 - 10439701
Alignment:
Q  342 aatttatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattctttgtatatctattattttgtctgatatgggtccattaacaagca 441  Q
    |||||||||||||||||| ||  |||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| ||||||||    
T  10439597 aatttatcattcaaactttaataatgccaattgctttgaaagtgtgcaacttttctttggatatctattattttgtctgatgtgggtccataaacaagca 10439696  T
Q  442 ttatt 446  Q
    |||||    
T  10439697 ttatt 10439701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 10228470 - 10228528
Alignment:
Q  8 cattcatcaatgacttgttactgatgataacatattgttctaaatattcttaaatgata 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10228470 cattcatcaatgacttgttactgatgataacatattgttctaaatattcttaaatgata 10228528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 196 - 301
Target Start/End: Original strand, 11767515 - 11767620
Alignment:
Q  196 atcaagtcattatctcagcagtaaagataaagagaatcgtaaacttctatttctaaaagccaataactatggtcattagagtttcgaacaattttaaaat 295  Q
    ||||||||| ||||| |||||| | ||||| || ||| |||| |||||| |||||||||||| || |||| |||||||||||||||||||||||| ||||    
T  11767515 atcaagtcactatcttagcagtgatgataaggaaaattgtaagcttctacttctaaaagccagtacctatcgtcattagagtttcgaacaatttttaaat 11767614  T
Q  296 actagt 301  Q
    ||||||    
T  11767615 actagt 11767620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 9997621 - 9997679
Alignment:
Q  8 cattcatcaatgacttgttactgatgataacatattgttctaaatattcttaaatgata 66  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  9997621 cattcatcaatggcttgttactgatgataacatattgttctaaatatccttaaatgata 9997679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 10106125 - 10106183
Alignment:
Q  8 cattcatcaatgacttgttactgatgataacatattgttctaaatattcttaaatgata 66  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  10106125 cattcatcaatggcttgttactgatgataacatattgttctaaatatccttaaatgata 10106183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 10232226 - 10232284
Alignment:
Q  8 cattcatcaatgacttgttactgatgataacatattgttctaaatattcttaaatgata 66  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  10232226 cattcatcaatgacttgttactgacgataacatattgttctaaatatccttaaatgata 10232284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 346 - 412
Target Start/End: Original strand, 11767636 - 11767702
Alignment:
Q  346 tatcattcaaacttcaaagatgccaattgcttttaaagtgtgcaactattctttgtatatctattat 412  Q
    |||| ||||||||||||||||||||||||||||| |||||| ||||| |||| ||||||||||||||    
T  11767636 tatcgttcaaacttcaaagatgccaattgcttttgaagtgtacaacttttctatgtatatctattat 11767702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 540 - 598
Target Start/End: Original strand, 10018145 - 10018204
Alignment:
Q  540 attcaatctccac-gctcttaattacctctaaaattttgctatttacgtgtgcaacttta 598  Q
    ||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||    
T  10018145 attcaatctccatagctcttaattacctttaaaattttgctatttacgtgtgcaacttta 10018204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 540 - 598
Target Start/End: Original strand, 10255639 - 10255698
Alignment:
Q  540 attcaatctccac-gctcttaattacctctaaaattttgctatttacgtgtgcaacttta 598  Q
    ||||||||||||  ||||||||||||||  ||||||||||||||||||||||||||||||    
T  10255639 attcaatctccatagctcttaattaccttcaaaattttgctatttacgtgtgcaacttta 10255698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 10365195 - 10365156
Alignment:
Q  8 cattcatcaatgacttgttactgatgataacatattgttc 47  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10365195 cattcatcaatgacttgttactgatgataacatattgttc 10365156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 598
Target Start/End: Original strand, 10118590 - 10118649
Alignment:
Q  540 attcaatctccac-gctcttaattacctctaaaattttgctatttacgtgtgcaacttta 598  Q
    ||||||||||||  ||||||||||||||  |||||||||||||||||||||||| |||||    
T  10118590 attcaatctccatagctcttaattaccttcaaaattttgctatttacgtgtgcagcttta 10118649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 432
Target Start/End: Original strand, 10499709 - 10499788
Alignment:
Q  354 aaacttcaaagatgccaattgc-ttttaaagtgtgcaactattctttgtatatctattattttgtctgatatgggtccat 432  Q
    |||||||||||||| ||||||| |||| | ||||| |||| |||||||||||| |||||||| ||| ||| ||| |||||    
T  10499709 aaacttcaaagatggcaattgcatttttacgtgtgaaacttttctttgtatatttattatttagtcagatgtggatccat 10499788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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