View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5540-Insertion-11 (Length: 593)
Name: NF5540-Insertion-11
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5540-Insertion-11 |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 7 - 592
Target Start/End: Original strand, 35313205 - 35313777
Alignment:
| Q |
7 |
accggtgaggaggaatttgccgaagagagtgagagaggatgtataggaagagttgttattgtgggatttgagggttgtgatgaggtgggaagtgtggttg |
106 |
Q |
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| T |
35313205 |
accggtgaggaggaatttgccgaagagagtgagagaggatgtgtaggaagagttgttattgtgggatttgagggttgtgatgaggtgggaagtgtggttg |
35313304 |
T |
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| Q |
107 |
atgtggggattgtgacgagggttgagggaaggaactgagaggaggctgcgttgtgaagtgagggaggttgagcctaattgttgaggttgaaggtagtggt |
206 |
Q |
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| T |
35313305 |
atgtggggattgtgacgagggttgagggaaggaactgagaggaggctgcgttgtgaagtgagggaggttgagcctaattgttgaggttgaaggtagtggt |
35313404 |
T |
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| Q |
207 |
tggagtgagatgaggaagagccactgtcatagtgatattccatgattcacatttgtaaggtaatgaattgaaaatggtgtggaagaaagcgaaatggatt |
306 |
Q |
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| T |
35313405 |
tggagtgagatgaggaagagccactgtcatagtgatattccatgattcacatttgtaaggtaatgaattgaaaatggtgtggaagaaagcgaaatggatt |
35313504 |
T |
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| Q |
307 |
aatattatatatatcaatggaaggtggatatgttattatatagtgcattcatattcaaacatgaaattatcctattcattgataatgaaaggcaaatagt |
406 |
Q |
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| T |
35313505 |
aatattatatatatcaatggaaggtggatatgttattatatagtgcattcatattcaaacatgaaattatcctattcattgataatgaaagacaaatagt |
35313604 |
T |
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| Q |
407 |
ttgaaaatactcttttatccattatgaagcagagacactatgtccctacaagatacgtataattatacactcaagtgaattttttaaattattaccaata |
506 |
Q |
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| T |
35313605 |
ttgaaaatactcttttatccattatgaagcatagacact------------------tataattatacactcaagtaaattttttaaattattaccaata |
35313686 |
T |
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| Q |
507 |
ttagtgtgtcggtatcggtgttttgtttga-----gtattcgtactttatagactatgaatcatttttctttacttatcttttaatcggaa |
592 |
Q |
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| T |
35313687 |
ttagtgtgtctctgtcaatgtcgtgtttgatatatgtatccgtactttatagactatgaatcatctttctttacttatcttttaatcggaa |
35313777 |
T |
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