View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5540-Insertion-12 (Length: 512)

Name: NF5540-Insertion-12
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5540-Insertion-12
NF5540-Insertion-12
[»] scaffold0038 (5 HSPs)
scaffold0038 (12-511)||(43996-44495)
scaffold0038 (167-511)||(28489-28833)
scaffold0038 (313-511)||(35766-35964)
scaffold0038 (125-330)||(40739-40940)
scaffold0038 (167-223)||(28897-28953)
[»] chr6 (69 HSPs)
chr6 (12-511)||(28243834-28244333)
chr6 (27-511)||(28326517-28327001)
chr6 (27-511)||(28504153-28504637)
chr6 (43-511)||(28186433-28186901)
chr6 (19-511)||(28296391-28296883)
chr6 (19-511)||(28515190-28515682)
chr6 (53-511)||(28182157-28182606)
chr6 (167-511)||(28227991-28228335)
chr6 (43-329)||(28140756-28141042)
chr6 (313-511)||(28235604-28235802)
chr6 (20-329)||(29842644-29842953)
chr6 (125-330)||(28240577-28240778)
chr6 (87-318)||(26647711-26647942)
chr6 (87-318)||(26753679-26753910)
chr6 (75-318)||(27704961-27705204)
chr6 (119-329)||(29827207-29827417)
chr6 (117-314)||(31285795-31285992)
chr6 (75-318)||(27680182-27680425)
chr6 (74-329)||(28787459-28787714)
chr6 (113-318)||(27609865-27610070)
chr6 (74-318)||(26803678-26803922)
chr6 (74-318)||(28793591-28793835)
chr6 (29-511)||(28097104-28097586)
chr6 (74-318)||(27603410-27603654)
chr6 (111-318)||(27717242-27717449)
chr6 (117-318)||(26624503-26624704)
chr6 (117-318)||(26730480-26730681)
chr6 (118-318)||(27697336-27697536)
chr6 (74-318)||(26885299-26885543)
chr6 (167-318)||(26950975-26951126)
chr6 (167-318)||(26978612-26978763)
chr6 (73-320)||(27426317-27426564)
chr6 (248-318)||(26636878-26636948)
chr6 (248-318)||(26742844-26742914)
chr6 (248-318)||(26849944-26850014)
chr6 (85-318)||(27676337-27676570)
chr6 (248-318)||(26960357-26960427)
chr6 (117-318)||(27591770-27591971)
chr6 (155-318)||(26657194-26657357)
chr6 (155-318)||(26763165-26763328)
chr6 (232-327)||(26812751-26812846)
chr6 (255-318)||(27664101-27664164)
chr6 (111-318)||(29469444-29469651)
chr6 (443-511)||(26812567-26812635)
chr6 (264-318)||(25075099-25075153)
chr6 (120-318)||(26825051-26825249)
chr6 (73-195)||(27530009-27530131)
chr6 (442-511)||(29827025-29827094)
chr6 (167-318)||(26862812-26862963)
chr6 (234-315)||(26938264-26938345)
chr6 (115-196)||(29523255-29523336)
chr6 (20-312)||(2186064-2186356)
chr6 (427-499)||(26892649-26892721)
chr6 (367-511)||(27592020-27592164)
chr6 (367-419)||(27676619-27676671)
chr6 (436-483)||(26938096-26938143)
chr6 (74-196)||(25484413-25484535)
chr6 (74-196)||(25512245-25512367)
chr6 (74-196)||(26057276-26057398)
chr6 (74-196)||(26077246-26077368)
chr6 (74-196)||(27215806-27215928)
chr6 (437-511)||(27530370-27530444)
chr6 (265-327)||(29476962-29477024)
chr6 (119-196)||(26144222-26144299)
chr6 (381-414)||(27680086-27680119)
chr6 (167-223)||(28228399-28228455)
chr6 (117-197)||(27663963-27664043)
chr6 (83-151)||(28490202-28490270)
chr6 (83-151)||(29802612-29802680)
[»] scaffold0019 (1 HSPs)
scaffold0019 (19-511)||(56945-57437)
[»] chr2 (5 HSPs)
chr2 (113-327)||(3280882-3281096)
chr2 (236-318)||(17992083-17992165)
chr2 (232-329)||(17662492-17662589)
chr2 (232-329)||(17713518-17713615)
chr2 (439-499)||(3280710-3280770)
[»] chr5 (1 HSPs)
chr5 (59-511)||(16691906-16692358)
[»] chr1 (6 HSPs)
chr1 (74-318)||(28126381-28126625)
chr1 (115-329)||(267087-267301)
chr1 (108-293)||(28132241-28132426)
chr1 (115-317)||(5922216-5922418)
chr1 (262-318)||(26137120-26137176)
chr1 (427-504)||(26136934-26137011)
[»] chr4 (8 HSPs)
chr4 (56-511)||(5089638-5090093)
chr4 (73-320)||(18074991-18075238)
chr4 (167-318)||(18678355-18678506)
chr4 (168-318)||(18722881-18723031)
chr4 (167-318)||(18654272-18654423)
chr4 (167-318)||(18688421-18688572)
chr4 (167-318)||(18698195-18698346)
chr4 (167-318)||(18730299-18730450)
[»] scaffold1870 (1 HSPs)
scaffold1870 (28-318)||(1-291)
[»] scaffold0277 (3 HSPs)
scaffold0277 (74-318)||(12381-12625)
scaffold0277 (117-318)||(3461-3662)
scaffold0277 (437-482)||(3781-3826)
[»] scaffold0419 (1 HSPs)
scaffold0419 (28-318)||(8719-9009)
[»] scaffold0349 (1 HSPs)
scaffold0349 (111-318)||(2282-2489)
[»] chr8 (5 HSPs)
chr8 (137-329)||(31906275-31906467)
chr8 (135-329)||(35984520-35984714)
chr8 (119-318)||(29272589-29272788)
chr8 (427-504)||(16441102-16441179)
chr8 (109-192)||(16353696-16353779)
[»] scaffold0003 (1 HSPs)
scaffold0003 (73-320)||(60799-61046)
[»] chr3 (1 HSPs)
chr3 (27-183)||(615163-615319)
[»] scaffold0012 (1 HSPs)
scaffold0012 (108-185)||(238605-238682)


Alignment Details
Target: scaffold0038 (Bit Score: 460; Significance: 0; HSPs: 5)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 12 - 511
Target Start/End: Complemental strand, 44495 - 43996
Alignment:
12 acctgtcgatctttttgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaa 111  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
44495 acctgttgatctttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataatgagcataaagtatatcttcaagttctttcaa 44396  T
112 tttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatcttttta 211  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44395 attatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatcttttta 44296  T
212 atcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccag 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
44295 atcggaatccttctataccgatctaatgcagatttccattctcctatattatttccaaataagtttgaacccactacttctaaagccaatggaaggccag 44196  T
312 aagcataagttactgcacaacgtaaaacaccatcgaaatttgaatccatcttattatttttgaaagaattccacctcaacaattcaagagcttcggtctc 411  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
44195 aagcataagttactgcacaccgtaaaacaccatcgaaatttgaatccaccttgttatttttgaaagaattccacctcaacaattcaagagcttcggtctc 44096  T
412 atttaacttaggtaattcatatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44095 atttaacttaggtaattcatatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 43996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 167 - 511
Target Start/End: Complemental strand, 28833 - 28489
Alignment:
167 tccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttc 266  Q
    ||||||| ||||||||||| ||||||||||||    || |||||||| |||||||||   | | ||| ||||||||||||||||||| | |||||||| |    
28833 tccaaagtatcaaagcttattttaagtatctctatgatatttttaatgggaatcctttcttcctgatttaatgcagatttccattcttcaatattcttcc 28734  T
267 caaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacaccatcgaaatttgaatccatcttatt 366  Q
    |||| |||||||||||||||||||||||| ||||||||| |||| ||| | ||||||||||||| || |||||||  |||||||||||||| | | | ||    
28733 caaacaagtttgaacccactacttctaaaaccaatggaatgccaaaagaaaaagttactgcacaccgcaaaacacggtcgaaatttgaatcgaccatgtt 28634  T
367 atttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatatgctctttcaatcccatgactttttagcaaatgt 466  Q
    || ||||||||  |||||||||| |||||||||||||||| ||||||||||||||  || ||||||||||||||||||||||||||||  |||||| |||    
28633 atatttgaaagcgttccacctcatcaattcaagagcttcgttctcatttaacttatctatttcatatgctctttcaatcccatgacttgctagcaattgt 28534  T
467 ctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
     ||| ||||||||||| ||||||| |||| |||||||| ||||||    
28533 ttgtttcgagtggtaatgatcactttacttccaggaccaaaccaa 28489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 313 - 511
Target Start/End: Complemental strand, 35964 - 35766
Alignment:
313 agcataagttactgcacaacgtaaaacaccatcgaaatttgaatccatcttattatttttgaaagaattccacctcaacaattcaagagcttcggtctca 412  Q
    |||||||||||||||||| |  |||||||| | |||||||||||| | ||| |||| ||| ||||  ||||||||||||||||||||||||||| |||||    
35964 agcataagttactgcacacctcaaaacaccgttgaaatttgaatcgaccttgttatattttaaagccttccacctcaacaattcaagagcttcgttctca 35865  T
413 tttaacttaggtaattcatatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
    |||||||||  || ||| || | |||||||||||||||||||  |||||| ||| ||||||||||||||| ||||||| |||| |||||||| ||||||    
35864 tttaacttatctatttcgtacgttctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttacttccaggaccaaaccaa 35766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 125 - 330
Target Start/End: Complemental strand, 40940 - 40739
Alignment:
125 aagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttc 224  Q
    ||||| ||| ||||||||||||||||| | ||||||||||||||||||||||||||    |||||||||||||  || |||| |||| | |||||||||     
40940 aagcaacaagcaatgtcgagaaaaacactttgctcatctttctccaaagcatcaaa----actttaagtatcttttggatctctttatttggaatccttt 40845  T
225 tataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttac 324  Q
     |||| | |||||||  |||| ||||||||||||||    |||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||||||||     
40844 catactggtctaatgtggattcccattctcctatatctaatccaaacaagttggaaccaactacttctaaagctaatggtaggccagaagcataagttat 40745  T
325 tgcaca 330  Q
    ||||||    
40744 tgcaca 40739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 28953 - 28897
Alignment:
167 tccaaagcatcaaagcttactttaagtatctcctgt-atctttttaatcggaatcctt 223  Q
    ||||||||||||||||||| ||||||||||| |||| || |||||||| |||||||||    
28953 tccaaagcatcaaagcttattttaagtatct-ctgtgatatttttaatgggaatcctt 28897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 460; Significance: 0; HSPs: 69)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 12 - 511
Target Start/End: Complemental strand, 28244333 - 28243834
Alignment:
12 acctgtcgatctttttgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaa 111  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
28244333 acctgttgatctttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataatgagcataaagtatatcttcaagttctttcaa 28244234  T
112 tttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatcttttta 211  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28244233 attatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatcttttta 28244134  T
212 atcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccag 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
28244133 atcggaatccttctataccgatctaatgcagatttccattctcctatattatttccaaataagtttgaacccactacttctaaagccaatggaaggccag 28244034  T
312 aagcataagttactgcacaacgtaaaacaccatcgaaatttgaatccatcttattatttttgaaagaattccacctcaacaattcaagagcttcggtctc 411  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
28244033 aagcataagttactgcacaccgtaaaacaccatcgaaatttgaatccaccttgttatttttgaaagaattccacctcaacaattcaagagcttcggtctc 28243934  T
412 atttaacttaggtaattcatatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28243933 atttaacttaggtaattcatatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 28243834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 27 - 511
Target Start/End: Complemental strand, 28327001 - 28326517
Alignment:
27 tgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaa 126  Q
    ||||||||||||||  |||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||    
28327001 tgagagatttttcaagcaacacactgatttgatacttcatggagttaccataatgagcatgaagtatatcttcaagttctttcaattcatatccattgaa 28326902  T
127 gcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttcta 226  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| | || ||||||||||| |||||||||  |    
28326901 gcagcaagcaatgtcgagaaaaacattctgctcatcttcatccaaagcatcaaagcttactttaagtatcgcttggatctttttaatgggaatcctttca 28326802  T
227 taccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactg 326  Q
    ||| ||| |||||||||||| |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
28326801 tactgatataatgcagatttacattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactg 28326702  T
327 cacaacgtaaaacaccatcgaaatttgaatccatcttattatttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaacttaggtaa 426  Q
    ||||   |||||  || || ||||||||||| |  || ||||||||||||| |||||||||||||||||||||||||||  ||| | |||||||||| |     
28326701 cacagtataaaatgccgtcaaaatttgaatcgactttgttatttttgaaagtattccacctcaacaattcaagagcttctctcttaattaacttaggaat 28326602  T
427 ttcatatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
28326601 ttcatatgctctttcaatcccgtgactttttagcaaatgtttgtctcgagtggtaacgatcactctactgccaggaccgaaccaa 28326517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 27 - 511
Target Start/End: Complemental strand, 28504637 - 28504153
Alignment:
27 tgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaa 126  Q
    ||||||||||||||  |||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||    
28504637 tgagagatttttcaagcaacacactgatttgatacttcatggagttaccataatgagcatgaagtatatcttcaagttctttcaattcatatccattgaa 28504538  T
127 gcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttcta 226  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| | || ||||||||||| |||||||||  |    
28504537 gcagcaagcaatgtcgagaaaaacattctgctcatcttcatccaaagcatcaaagcttactttaagtatcgcttggatctttttaatgggaatcctttca 28504438  T
227 taccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactg 326  Q
    ||| ||| |||||||||||| |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
28504437 tactgatataatgcagatttacattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactg 28504338  T
327 cacaacgtaaaacaccatcgaaatttgaatccatcttattatttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaacttaggtaa 426  Q
    ||||   |||||  || || ||||||||||| |  || ||||||||||||| |||||||||||||||||||||||||||  ||| | |||||||||| |     
28504337 cacagtataaaatgccgtcaaaatttgaatcgactttgttatttttgaaagtattccacctcaacaattcaagagcttctctcttaattaacttaggaat 28504238  T
427 ttcatatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
28504237 ttcatatgctctttcaatcccgtgactttttagcaaatgtttgtctcgagtggtaacgatcactctactgccaggaccgaaccaa 28504153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 43 - 511
Target Start/End: Complemental strand, 28186901 - 28186433
Alignment:
43 caacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcg 142  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||| | ||||||    
28186901 caacactctgatttgatatttcatgcagttaccataatgagcatgaagtacatcttcaagttctttcaattcatatcctttgaagcagcaagcgatgtcg 28186802  T
143 agaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcag 242  Q
    ||||||||||| || ||  ||| | |||||||||||||||||||||| |||||||| || |||||||||   |||||||||  |||| ||| ||||||||    
28186801 agaaaaacattttgttctgcttcccccaaagcatcaaagcttactttgagtatctcttggatctttttatcgggaatcctttcatactgatttaatgcag 28186702  T
243 atttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacacc 342  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||| |     
28186701 atttccattctcctatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactgcatggtgtaaaacgct 28186602  T
343 atcgaaatttgaatccatcttattatttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatatgctctttca 442  Q
     |||||||||| ||| |  || |||||||| ||||  |||||| |||||||||||||||||||  |||||||||||||| |||||| |||||||||||||    
28186601 gtcgaaatttgtatcaactttgttattttttaaagccttccacgtcaacaattcaagagcttctttctcatttaacttatgtaatttatatgctctttca 28186502  T
443 atcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
    |||||||||     |||||| ||| ||||||||||||||| ||||||  ||||||||||||| ||||||    
28186501 atcccatgatgagctagcaattgtttgtctcgagtggtaatgatcacaatactaccaggaccaaaccaa 28186433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 511
Target Start/End: Original strand, 28296391 - 28296883
Alignment:
19 gatctttttgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatat 118  Q
    ||||||| |||||||||| |||| |||||| ||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||    
28296391 gatctttatgagagatttgtcatgcaacactctgatttgataattcatgcagttaccataatgagcatgaagtatattttcaagttctttcaattcatat 28296490  T
119 cctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaa 218  Q
    ||||||||||||||| | ||||| ||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| || |||||| |||| ||      
28296491 cctttgaagcagcaagcgatgtcaagaaaaacatttttctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttctaatgggtc 28296590  T
219 tccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||||  |||| ||  |||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
28296591 tcctttcatactgacttaatgcagatttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcata 28296690  T
319 agttactgcacaacgtaaaacaccatcgaaatttgaatccatcttattatttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaac 418  Q
    |||||| ||     ||||||   | || ||||||| ||| |  || ||||||||||||| |||||| ||||||||||||||||||||  | |||||||||    
28296691 agttacagcctggtgtaaaatgtcgtcaaaatttgtatcgactttgttatttttgaaagcattccatctcaacaattcaagagcttctttgtcatttaac 28296790  T
419 ttaggtaattcatatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
    ||| ||| ||||||||||||||||||||||||||  | |||||| | | | ||| ||||||||| ||||||| |||| ||| |||| ||||||    
28296791 ttatgtatttcatatgctctttcaatcccatgaccatctagcaattttttttcttgagtggtaatgatcactttacttccaagaccaaaccaa 28296883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 511
Target Start/End: Complemental strand, 28515682 - 28515190
Alignment:
19 gatctttttgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatat 118  Q
    ||||||| |||||||||| |||| |||||| ||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||    
28515682 gatctttatgagagatttgtcatgcaacactctgatttgataattcatgcagttaccataatgagcatgaagtatattttcaagttctttcaattcatat 28515583  T
119 cctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaa 218  Q
    ||||||||||||||| | ||||| ||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| || |||||| |||| ||      
28515582 cctttgaagcagcaagcgatgtcaagaaaaacatttttctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttctaatgggtc 28515483  T
219 tccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||||  |||| ||  |||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
28515482 tcctttcatactgacttaatgcagatttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcata 28515383  T
319 agttactgcacaacgtaaaacaccatcgaaatttgaatccatcttattatttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaac 418  Q
    |||||| ||     ||||||   | || ||||||| ||| |  || ||||||||||||| |||||| ||||||||||||||||||||  | |||||||||    
28515382 agttacagcctggtgtaaaatgtcgtcaaaatttgtatcgactttgttatttttgaaagcattccatctcaacaattcaagagcttctttgtcatttaac 28515283  T
419 ttaggtaattcatatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
    ||| ||| ||||||||||||||||||||||||||  | |||||| | | | ||| ||||||||| ||||||| |||| ||| |||| ||||||    
28515282 ttatgtatttcatatgctctttcaatcccatgaccatctagcaattttttttcttgagtggtaatgatcactttacttccaagaccaaaccaa 28515190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 53 - 511
Target Start/End: Complemental strand, 28182606 - 28182157
Alignment:
53 atttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacat 152  Q
    ||||||| |||||||||| ||||||||| |||||||| ||||||||||| ||||||||| | ||||||||| ||| | |||  |||||| ||||||||||    
28182606 atttgatgtttcatgcagctaccataatgagcatgaaatatatcttcaacttctttcaaatcatatccttttaagaaacaagaaatgtccagaaaaacat 28182507  T
153 tctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattc 252  Q
    |||||||||| | ||||| ||||||| |||| |||||||||||||| || |||||||| || ||||||||| |         ||||||||||||| ||||    
28182506 tctgctcatcatcctccagagcatcatagctaactttaagtatctcttggatctttttcatgggaatccttgt---------taatgcagatttcgattc 28182416  T
253 tcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacaccatcgaaattt 352  Q
    ||  |||||||||||||| ||||| |||||||||||||||||||||||||||||| | || ||| ||||||||||     ||||||   | || |||||     
28182415 tctcatattctttccaaacaagttggaacccactacttctaaagccaatggaaggactgatgcaaaagttactgcttggtgtaaaatgacgtcaaaattc 28182316  T
353 gaatccatcttattatttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatatgctctttcaatcccatgac 452  Q
    | ||| |  || ||| ||||||||| |  ||||||||||||||||||||||||  ||||||||||||||  || ||||||||||||||||||||||||||    
28182315 gcatcaactttgttaattttgaaagcagaccacctcaacaattcaagagcttctttctcatttaacttatctatttcatatgctctttcaatcccatgac 28182216  T
453 tttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
     |  |||||| |||  |||||||||||||| ||||||| ||||||||||||| ||||||    
28182215 ctactagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaa 28182157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 167 - 511
Target Start/End: Complemental strand, 28228335 - 28227991
Alignment:
167 tccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttc 266  Q
    ||||||| ||||||||||| ||||||||||||    || |||||||| |||||||||   | | ||| ||||||||||||||||||| | |||||||| |    
28228335 tccaaagtatcaaagcttattttaagtatctctatgatatttttaatgggaatcctttcttcctgatttaatgcagatttccattcttcaatattcttcc 28228236  T
267 caaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacaccatcgaaatttgaatccatcttatt 366  Q
    |||| |||||||||||||||||||||||| ||||||||| |||| ||| | ||||||||||||| || |||||||  |||||||||||||| | | | ||    
28228235 caaacaagtttgaacccactacttctaaaaccaatggaatgccaaaagaaaaagttactgcacaccgcaaaacacggtcgaaatttgaatcgaccatgtt 28228136  T
367 atttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatatgctctttcaatcccatgactttttagcaaatgt 466  Q
    || ||||||||  |||||||||| |||||||||||||||| ||||||||||||||  || ||||||||||||||||||||||||||||  |||||| |||    
28228135 atatttgaaagcgttccacctcatcaattcaagagcttcgttctcatttaacttatctatttcatatgctctttcaatcccatgacttgctagcaattgt 28228036  T
467 ctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
     ||| ||||||||||| ||||||| |||| |||||||| ||||||    
28228035 ttgtttcgagtggtaatgatcactttacttccaggaccaaaccaa 28227991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 43 - 329
Target Start/End: Complemental strand, 28141042 - 28140756
Alignment:
43 caacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcg 142  Q
    |||||| || || |||||||||||||| | ||| |||| |||||  || ||||||||||  |||   ||| |||||||| |||| || ||| ||||||||    
28141042 caacactctaatatgatatttcatgcattcaccgtaatgagcatagagaatatcttcaacctctgctaatatatatcctctgaaacaacaagcaatgtcg 28140943  T
143 agaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcag 242  Q
    ||||||||| | ||||||||||||||||||  ||||||||| ||||||||||||| | | | || ||||   |||||||||  |||||||||||||| ||    
28140942 agaaaaacactttgctcatctttctccaaactatcaaagctcactttaagtatcttcaggacctctttatgaggaatcctttcataccgatctaatgtag 28140843  T
243 atttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcac 329  Q
    ||||||| ||  || ||| ||||||||| ||| | ||||| ||||||||||||||||||||||||||||| |||||||| |||||||    
28140842 atttccactcatctttatgctttccaaacaagctagaaccaactacttctaaagccaatggaaggccagaggcataagtaactgcac 28140756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 313 - 511
Target Start/End: Complemental strand, 28235802 - 28235604
Alignment:
313 agcataagttactgcacaacgtaaaacaccatcgaaatttgaatccatcttattatttttgaaagaattccacctcaacaattcaagagcttcggtctca 412  Q
    |||||||||||||||||| |  |||||||| | |||||||||||| | ||| |||| ||| ||||  ||||||||||||||||||||||||||| |||||    
28235802 agcataagttactgcacacctcaaaacaccgttgaaatttgaatcgaccttgttatattttaaagccttccacctcaacaattcaagagcttcgttctca 28235703  T
413 tttaacttaggtaattcatatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
    |||||||||  || ||| || | |||||||||||||||||||  |||||| ||| ||||||||||||||| ||||||| |||| |||||||| ||||||    
28235702 tttaacttatctatttcgtacgttctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttacttccaggaccaaaccaa 28235604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 29842644 - 29842953
Alignment:
20 atctttttgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatc 119  Q
    |||||| |||||| ||||||  ||||||| |  || |||||||  ||||| | ||||| || ||||  ||| ||||||||||  |||  ||| | ||| |    
29842644 atctttatgagagttttttcgaccaacactccaatatgatattctatgcattgaccatgataagcacaaagaatatcttcaacctctcccaaatcatacc 29842743  T
120 ctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaat 219  Q
    |||||||||| ||| |||||||||||||||||   || || |||| |||||||||||||||||||| ||||||||| |  || |||| |||| | |||||    
29842744 ctttgaagcaacaagcaatgtcgagaaaaacaccttgttcgtcttcctccaaagcatcaaagcttattttaagtatattgtggatctctttattaggaat 29842843  T
220 ccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataa 319  Q
    ||||  ||||| |||||||| ||||||||||||| |||||||||||||||| ||   || ||| |||| ||||||| |||| ||||||||||||||||||    
29842844 cctttcatacctatctaatgtagatttccattcttctatattctttccaaacaaagctggacctactaattctaaaaccaacggaaggccagaagcataa 29842943  T
320 gttactgcac 329  Q
    | || |||||    
29842944 gctattgcac 29842953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 125 - 330
Target Start/End: Complemental strand, 28240778 - 28240577
Alignment:
125 aagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttc 224  Q
    ||||| ||| ||||||||||||||||| | ||||||||||||||||||||||||||    |||||||||||||  || |||| |||| | |||||||||     
28240778 aagcaacaagcaatgtcgagaaaaacactttgctcatctttctccaaagcatcaaa----actttaagtatcttttggatctctttatttggaatccttt 28240683  T
225 tataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttac 324  Q
     |||| | |||||||  |||| ||||||||||||||    |||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||||||||     
28240682 catactggtctaatgtggattcccattctcctatatctaatccaaacaagttggaaccaactacttctaaagctaatggtaggccagaagcataagttat 28240583  T
325 tgcaca 330  Q
    ||||||    
28240582 tgcaca 28240577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 87 - 318
Target Start/End: Complemental strand, 26647942 - 26647711
Alignment:
87 gaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttac 186  Q
    |||||||||||||||  || | | || || ||||||||||||| ||| ||||||| ||||| ||| ||||||  |||| ||||||||||||| |||||||    
26647942 gaagtatatcttcaaactcctcccatctacatcctttgaagcaacaagcaatgtctagaaagacactctgctgctcttcctccaaagcatcatagcttac 26647843  T
187 tttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccact 286  Q
    |||||||||||| || ||||||||| | |||||| ||  ||| | |||||||| |   ||||||||| ||||  |||||||| ||||||| |||||||||    
26647842 tttaagtatctcgtggatctttttattgggaatcttttcatatccatctaatgtacccttccattcttctatgctctttccatataagttggaacccact 26647743  T
287 acttctaaagccaatggaaggccagaagcata 318  Q
    | ||||||| | || |||||||| ||||||||    
26647742 atttctaaaactaagggaaggcctgaagcata 26647711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 87 - 318
Target Start/End: Complemental strand, 26753910 - 26753679
Alignment:
87 gaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttac 186  Q
    |||||||||||||||  || | | || || ||||||||||||| ||| ||||||| ||||| ||| ||||||  |||| ||||||||||||| |||||||    
26753910 gaagtatatcttcaaactcctcccatctacatcctttgaagcaacaagcaatgtctagaaagacactctgctgctcttcctccaaagcatcatagcttac 26753811  T
187 tttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccact 286  Q
    |||||||||||| || ||||||||| | |||||| ||  ||| | |||||||| |   ||||||||| ||||  |||||||| ||||||| |||||||||    
26753810 tttaagtatctcgtggatctttttattgggaatcttttcatatccatctaatgtacccttccattcttctatgctctttccatataagttggaacccact 26753711  T
287 acttctaaagccaatggaaggccagaagcata 318  Q
    | ||||||| | || |||||||| ||||||||    
26753710 atttctaaaactaagggaaggcctgaagcata 26753679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 75 - 318
Target Start/End: Original strand, 27704961 - 27705204
Alignment:
75 cataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagc 174  Q
    |||||| || ||||||||||| |||||  ||| ||||| |||| ||||| ||||| ||| ||||||| ||||| ||| ||||||| ||||  ||||||||    
27704961 cataatgagaatgaagtatattttcaacctctgtcaatctatacccttttaagcaacaagcaatgtcaagaaagacactctgctcctcttcttccaaagc 27705060  T
175 atcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataag 274  Q
    |||| |||| ||| |||||||||  || |||| |||| | ||||||||   ||||| |||||||| |   ||||||||| |||| ||||| ||||| |||    
27705061 atcatagctcactctaagtatcttttggatctctttattgggaatcctgtcatacccatctaatgtattcttccattcttctatgttcttgccaaacaag 27705160  T
275 tttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    || ||||||| |||||||||| | || |||||||||||||||||    
27705161 ttagaacccattacttctaaaactaacggaaggccagaagcata 27705204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 119 - 329
Target Start/End: Complemental strand, 29827417 - 29827207
Alignment:
119 cctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaa 218  Q
    ||||||||||| ||| |||||||||||||||||   || ||||||| ||||||||||||||| |||| ||||||||| |  || |||| |||| | ||||    
29827417 cctttgaagcaacaagcaatgtcgagaaaaacaccttgttcatcttcctccaaagcatcaaaacttattttaagtatattttggatctctttattaggaa 29827318  T
219 tccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||||  ||| | |||||||  ||||||||||||| |||||||||||||||| ||    | ||| |||| ||||||| |||| |||||||||||||||||    
29827317 tcctttcatatctatctaatatagatttccattcttctatattctttccaaacaacgcgggacctactaattctaaaaccaacggaaggccagaagcata 29827218  T
319 agttactgcac 329  Q
    || || |||||    
29827217 agctattgcac 29827207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 117 - 314
Target Start/End: Complemental strand, 31285992 - 31285795
Alignment:
117 atcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcgg 216  Q
    ||||||||||||| ||| ||||||| ||||| ||| ||||||| ||||  |||||||||||| ||||||||||||||||||  || |||| |||| | ||    
31285992 atcctttgaagcaacaagcaatgtccagaaagacactctgctcctcttcttccaaagcatcatagcttactttaagtatcttttggatctctttattggg 31285893  T
217 aatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaag 314  Q
    |||| |   ||||| |||||||| |   ||||||| | ||||  |||||||||| |||||||||||||||||||||| | | ||||||||||||||||    
31285892 aatcttgtcatacccatctaatgtactcttccatttttctatgctctttccaaacaagtttgaacccactacttctataactaatggaaggccagaag 31285795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 75 - 318
Target Start/End: Complemental strand, 27680425 - 27680182
Alignment:
75 cataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagc 174  Q
    |||||| ||||  |||||||||||| |  || ||| ||| ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||  ||||||||    
27680425 cataatgagcacaaagtatatcttcgaactccttccattgatatcctttgaagcagcaagcgatgtcaagaaagacactctgctcctcttcttccaaagc 27680326  T
175 atcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataag 274  Q
    |||| |||| || ||||||||||  || |||| |||| | ||||||||   ||||| |||||||| |   ||||| ||| ||||  |||||||||| |||    
27680325 atcatagctcaccttaagtatcttttggatctctttattgggaatcctgtcatacccatctaatgtatgcttccaatcttctatgctctttccaaacaag 27680226  T
275 tttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    || |||||||||||||||||| | || ||||||||| |||||||    
27680225 ttagaacccactacttctaaaactaacggaaggccaaaagcata 27680182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 74 - 329
Target Start/End: Complemental strand, 28787714 - 28787459
Alignment:
74 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaag 173  Q
    ||||||| |||| |||||||||||||||  || | | | | | ||||||||||||| ||  ||||||| ||||||||| | || |  |||| ||||||||    
28787714 ccataatgagcacgaagtatatcttcaaactcctcccactcacatcctttgaagcaacatgcaatgtctagaaaaacactttgttgctcttcctccaaag 28787615  T
174 catcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataa 273  Q
    ||||| ||||||||||||||||||| || ||||||||| | |||||| ||  ||| | |||||| | |   ||||||||| ||||  |||||||||| ||    
28787614 catcatagcttactttaagtatctcgtggatctttttattgggaatcttttcatatccatctaaagtacccttccattcttctatcgtctttccaaacaa 28787515  T
274 gtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcac 329  Q
    ||| |||||||||| ||||||| | || |||||||| ||||||||||  |||||||    
28787514 gttggaacccactatttctaaaactaagggaaggcccgaagcataagaaactgcac 28787459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 113 - 318
Target Start/End: Original strand, 27609865 - 27610070
Alignment:
113 ttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaa 212  Q
    ||||||||||||||||| ||| ||||||| ||||| ||| | ||||| ||||  ||||||| |||| |||| |||||||||||||  || |||| ||||     
27609865 ttatatcctttgaagcaacaagcaatgtccagaaagacactttgctcctcttcttccaaagaatcatagctcactttaagtatcttttggatctctttat 27609964  T
213 tcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccaga 312  Q
    | ||||||||   ||||| |||||||| | | ||||||||  |||| ||||||||||| ||||| |||||||||| ||||| | | || |||||||||||    
27609965 tgggaatcctgtcatacccatctaatgtatacttccattcctctatgttctttccaaacaagttagaacccactatttctataactaacggaaggccaga 27610064  T
313 agcata 318  Q
    ||||||    
27610065 agcata 27610070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 318
Target Start/End: Complemental strand, 26803922 - 26803678
Alignment:
74 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaag 173  Q
    ||||||| | ||||||||||||||||||  || | | ||  | ||||||||||||| ||| ||||||| ||||| ||| ||||||  |||| ||||||||    
26803922 ccataatgaacatgaagtatatcttcaaactcctcccatccacatcctttgaagcaacaagcaatgtctagaaagacactctgctgctcttcctccaaag 26803823  T
174 catcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataa 273  Q
    ||||| ||||||||||||||||||| || ||||||||| | |||||| ||  ||| | |||||||| |   |||||||||  |||  |||||||||| ||    
26803822 catcatagcttactttaagtatctcgtggatctttttattgggaatcttttcatatccatctaatgtacccttccattcttttatgctctttccaaacaa 26803723  T
274 gtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    ||| ||||||||||  |||||| | || ||||| || ||||||||    
26803722 gttggaacccactatctctaaaactaagggaagacctgaagcata 26803678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 318
Target Start/End: Complemental strand, 28793835 - 28793591
Alignment:
74 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaag 173  Q
    ||||||| |||| |||||||||||||||  || | | | | | ||||||||||||| ||  ||||||| ||||||||| | || |  |||| ||||||||    
28793835 ccataatgagcacgaagtatatcttcaaactcctcccactcacatcctttgaagcaacatgcaatgtctagaaaaacactttgttgctcttcctccaaag 28793736  T
174 catcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataa 273  Q
    ||||| ||||||||||||||||||| || ||||||||| | |||||| ||  ||| | |||||| | |   ||||||||| ||||  |||||||||| ||    
28793735 catcatagcttactttaagtatctcgtggatctttttattgggaatcttttcatatccatctaaagtacccttccattcttctatcgtctttccaaacaa 28793636  T
274 gtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    ||| |||||||||| ||||||| | || |||||||| ||||||||    
28793635 gttggaacccactatttctaaaactaagggaaggcccgaagcata 28793591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 29 - 511
Target Start/End: Original strand, 28097104 - 28097586
Alignment:
29 agagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagc 128  Q
    |||||||||| | ||||||| |  || |||||| ||||||  | ||| |||| ||||  ||| |||||||| |  |||||||||||||| ||||||||||    
28097104 agagattttttaaccaacactccaatgtgatatctcatgcgttgaccgtaatgagcacaaagcatatcttccacctctttcaatttataccctttgaagc 28097203  T
129 agcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctata 228  Q
    | ||| ||||||||||||||||| ||  |||||||| ||||||||||||||| || ||   |||||| |  || |||| || | | ||||| |||  |||    
28097204 aacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcata 28097303  T
229 ccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgca 328  Q
     ||||| ||   ||| ||||||||| |||||| ||||||| | ||||| ||||| | || ||| || |||||||||||||||| ||||||| ||| ||||    
28097304 tcgatccaacaaagaattccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgca 28097403  T
329 caacgtaaaacaccatcgaaatttgaatccatcttattatttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaacttaggtaatt 428  Q
    |    ||||| ||  ||  || ||||||| |  |  |||  ||| ||||  |||||||| | ||||||||| |||||  |||  |||||||   ||  ||    
28097404 cggtttaaaatacactcataacttgaatcaacttgtttagctttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgttt 28097503  T
429 catatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
    |||||| |  ||||||||||||||||  |||||| | | | |||||||||||||| ||||||||||| |||| ||| ||||||    
28097504 catatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaa 28097586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 74 - 318
Target Start/End: Original strand, 27603410 - 27603654
Alignment:
74 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaag 173  Q
    ||||||| |||| |||||||||||||||   ||| ||||  | ||||||||||||| ||| ||||||| ||||| ||| ||||||  |||| ||||||||    
27603410 ccataatgagcacgaagtatatcttcaaccacttccaatccacatcctttgaagcaacaagcaatgtctagaaagacactctgctgctcttcctccaaag 27603509  T
174 catcaaagcttactttaagtatctcctgtatctttttaatcggaatccttct-ataccgatctaatgcagatttccattctcctatattctttccaaata 272  Q
    ||||| ||||||||||||| ||||| || ||||||||| | ||||| ||||| ||| |  ||||| | |   ||||||||| ||||  |||||||||| |    
27603510 catcatagcttactttaagaatctcgtggatctttttattgggaat-cttctcatatccttctaacgtacccttccattcttctatcctctttccaaaca 27603608  T
273 agtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||| |||||||||||||| ||| | || ||||| || ||||||||    
27603609 agttggaacccactacttccaaaactaagggaagtcctgaagcata 27603654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 111 - 318
Target Start/End: Original strand, 27717242 - 27717449
Alignment:
111 atttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatcttttt 210  Q
    ||||| ||| ||||||||| ||| ||||||| ||||| ||| | ||||  |||| ||||||||||||| | ||||||||||||||||  || |||| |||    
27717242 atttacatcttttgaagcaacaagcaatgtctagaaagacactttgctgctcttcctccaaagcatcataacttactttaagtatcttttggatctcttt 27717341  T
211 aatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggcca 310  Q
    | | ||||||||   ||||| |||||||| |   ||||||||  |||| ||||||||| ||||||| |||||||||| ||||| | | || |||||||||    
27717342 attgggaatcctgtcatacccatctaatgtattcttccattcctctatgttctttccagataagttagaacccactatttctataactaacggaaggcca 27717441  T
311 gaagcata 318  Q
    ||||||||    
27717442 gaagcata 27717449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 117 - 318
Target Start/End: Complemental strand, 26624704 - 26624503
Alignment:
117 atcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcgg 216  Q
    |||||||  |||| ||| |||| || ||||| ||| ||||||| ||||  |||||||||||| |||| |||||||||||||  || |||| |||| | ||    
26624704 atcctttcgagcaacaagcaatatctagaaagacactctgctcctcttcttccaaagcatcatagctcactttaagtatcttttggatctctttattggg 26624605  T
217 aatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagca 316  Q
    ||||||   ||||| |||||||| | | ||||||||| ||||  |||||||||| ||||| |||||||| | ||||||| | || |||||||||||||||    
26624604 aatcctgtcatacccatctaatgtatacttccattcttctatgctctttccaaacaagttggaacccacaatttctaaaactaacggaaggccagaagca 26624505  T
317 ta 318  Q
    ||    
26624504 ta 26624503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 117 - 318
Target Start/End: Complemental strand, 26730681 - 26730480
Alignment:
117 atcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcgg 216  Q
    |||||||  |||| ||| |||| || ||||| ||| ||||||| ||||  |||||||||||| |||| |||||||||||||  || |||| |||| | ||    
26730681 atcctttcgagcaacaagcaatatctagaaagacactctgctcctcttcttccaaagcatcatagctcactttaagtatcttttggatctctttattggg 26730582  T
217 aatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagca 316  Q
    ||||||   ||||| |||||||| | | ||||||||| ||||  |||||||||| ||||| |||||||| | ||||||| | || |||||||||||||||    
26730581 aatcctgtcatacccatctaatgtatacttccattcttctatgctctttccaaacaagttggaacccacaatttctaaaactaacggaaggccagaagca 26730482  T
317 ta 318  Q
    ||    
26730481 ta 26730480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 318
Target Start/End: Original strand, 27697336 - 27697536
Alignment:
118 tcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcgga 217  Q
    |||||||||||| ||| ||||||| ||||| ||| | ||||| ||||  |||||||||||| |||| ||| |||||||||  || |||| |||| | |||    
27697336 tcctttgaagcaacaagcaatgtccagaaagacactttgctcctcttcttccaaagcatcatagctcactctaagtatcttttggatctctttattggga 27697435  T
218 atccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcat 317  Q
    |||||   ||||| |||||||  | | ||||||||| |||| ||||||||||| ||||| |||||||||| ||||| | | || |||||||||||| |||    
27697436 atcctgtcatacccatctaatatatacttccattcttctatgttctttccaaacaagttagaacccactatttctataactaacggaaggccagaaacat 27697535  T
318 a 318  Q
    |    
27697536 a 27697536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 318
Target Start/End: Complemental strand, 26885543 - 26885299
Alignment:
74 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaag 173  Q
    ||||||| |||||||||||||||||| |  ||| || ||||| | ||||||||||| ||| | || || ||||| ||| | ||||| |||| ||| ||||    
26885543 ccataatgagcatgaagtatatcttcgacctctgtccatttacaccctttgaagcaacaagctatatccagaaagacactttgctcctcttcctctaaag 26885444  T
174 catcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataa 273  Q
    ||||| ||||||||||||||||||| || |||||| || | |||||| ||  ||| | ||||| || |   ||||||  | ||||  |||||||||| ||    
26885443 catcatagcttactttaagtatctcttggatctttgtattaggaatcttttcatatccatctagtgtactcttccatgtttctatgctctttccaaacaa 26885344  T
274 gtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    ||| |||||||||| ||||| | | || |||||||| ||||||||    
26885343 gttggaacccactatttctataactaaaggaaggcccgaagcata 26885299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 318
Target Start/End: Complemental strand, 26951126 - 26950975
Alignment:
167 tccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttc 266  Q
    |||||||||||||||||||||||||||||||  || || | || |   ||||| |||  ||||  |||||||  ||| |  |||||| ||||| ||||||    
26951126 tccaaagcatcaaagcttactttaagtatcttttggatatcttcatgtggaattctttcatacttatctaataaagactcacattctgctatagtctttc 26951027  T
267 caaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||| ||||||    
26951026 caaacaagttagaacccactacttctaaagctaatggaaggccagcagcata 26950975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 318
Target Start/End: Complemental strand, 26978763 - 26978612
Alignment:
167 tccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttc 266  Q
    |||||||||||||||||||||||||||||||  || || | || |   ||||| |||| ||||  |||||||  ||| |  || ||| ||||| ||||||    
26978763 tccaaagcatcaaagcttactttaagtatcttttggatatgttcaggtggaattcttccatacttatctaatatagactcacactctgctatactctttc 26978664  T
267 caaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||| ||| |||||||||||||||||||||| |||||||| |||||||||||    
26978663 caaacaagcttgaacccactacttctaaagctaatggaagaccagaagcata 26978612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 320
Target Start/End: Original strand, 27426317 - 27426564
Alignment:
73 accataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaa 172  Q
    |||||||| |||||||||||| ||||  |  | || | ||||| | ||||||||||| ||| ||||||| ||||| ||| | ||||| |||| |||||||    
27426317 accataatgagcatgaagtatttctttgaccttttcccatttacaacctttgaagcaacaagcaatgtctagaaagacactttgctcctcttcctccaaa 27426416  T
173 gcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaata 272  Q
    | |||| |||| |||||||||||    || |||| |||| | |||||| ||  ||||| |||||||| |   || |||||| |||| ||||||||||| |    
27426417 gaatcatagctcactttaagtattctttggatctctttattgggaatcttttcataccaatctaatgtattcttgcattcttctatgttctttccaaaca 27426516  T
273 agtttgaacccactacttctaaagccaatggaaggccagaagcataag 320  Q
    |||| |||||||||| ||||| | | |  |||||||||||||||||||    
27426517 agttagaacccactatttctataactaccggaaggccagaagcataag 27426564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 26636948 - 26636878
Alignment:
248 cattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||||| ||||| |||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||    
26636948 cattctgctatactctttccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcata 26636878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 26742914 - 26742844
Alignment:
248 cattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||||| ||||| |||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||    
26742914 cattctgctatactctttccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcata 26742844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 26850014 - 26849944
Alignment:
248 cattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||||| ||||| |||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||    
26850014 cattcttctatactctttccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcata 26849944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 318
Target Start/End: Original strand, 27676337 - 27676570
Alignment:
85 atgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagctt 184  Q
    ||||||||| | ||| | ||||| |||| || ||||||||| ||| ||| |||| || | ||| ||| ||||||| ||||  |||||||||||| ||||     
27676337 atgaagtatctgttcgacttcttccaatctacatcctttgatgcaacaagcaatatccaaaaagacactctgctcctcttcgtccaaagcatcatagctc 27676436  T
185 actttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaaccca 284  Q
    | | |||||||||  || || | ||||   ||||| |||| ||||  |||||||| ||| |  |||||| | ||| |||||||||| ||||| |||||||    
27676437 agtctaagtatcttttggatatctttatgtggaattcttccatacttatctaatgtagactcacattctgcaatactctttccaaacaagttagaaccca 27676536  T
285 ctacttctaaagccaatggaaggccagaagcata 318  Q
    |||||||||  || ||||||||||||||||||||    
27676537 ctacttctatcgctaatggaaggccagaagcata 27676570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 26960427 - 26960357
Alignment:
248 cattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||||| ||||| |||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||    
26960427 cattctgctatactcttgccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcata 26960357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 117 - 318
Target Start/End: Original strand, 27591770 - 27591971
Alignment:
117 atcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcgg 216  Q
    ||||||||| ||| ||| |||| || | ||| ||| ||||||| ||||  |||||||||||| |||| | | |||||||||  || || | ||||   ||    
27591770 atcctttgatgcaacaagcaatatccaaaaagacactctgctcctcttcttccaaagcatcatagctgagtctaagtatcttttggatatctttatgtgg 27591869  T
217 aatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagca 316  Q
    ||| |||| ||||  |||||||| ||| |  |||||| | ||| |||||||||| ||||| ||||||||||||||||  || ||||||||||||||||||    
27591870 aattcttccatacttatctaatgtagactcacattctgcaatactctttccaaacaagttagaacccactacttctatcgctaatggaaggccagaagca 27591969  T
317 ta 318  Q
    ||    
27591970 ta 27591971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 155 - 318
Target Start/End: Complemental strand, 26657357 - 26657194
Alignment:
155 tgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctc 254  Q
    ||||| |||| ||||||| ||||| ||||||||||||||||||| || ||||||||| | |||||| ||  ||| | |||||||| |   ||||||| |     
26657357 tgctcctcttcctccaaatcatcatagcttactttaagtatctcttgaatctttttattgggaatcttttcatatccatctaatgtactcttccattttt 26657258  T
255 ctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    | ||  |||||||||| ||||||||| |||||||||||| | | || ||||| || ||||||||    
26657257 cgatgctctttccaaacaagtttgaagccactacttctataactaagggaagtcctgaagcata 26657194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 155 - 318
Target Start/End: Complemental strand, 26763328 - 26763165
Alignment:
155 tgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctc 254  Q
    ||||| |||| ||||||| ||||| ||||||||||||||||||| || ||||||||| | |||||| ||  ||| | |||||||| |   ||||||| |     
26763328 tgctcctcttcctccaaatcatcatagcttactttaagtatctcttgaatctttttattgggaatcttttcatatccatctaatgtactcttccattttt 26763229  T
255 ctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    | ||  |||||||||| ||||||||| |||||||||||| | | || ||||| || ||||||||    
26763228 cgatgctctttccaaacaagtttgaagccactacttctataactaagggaagtcctgaagcata 26763165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 26812846 - 26812751
Alignment:
232 atctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgc 327  Q
    |||||||| ||||| ||| ||| | ||| |||||||||| ||||| |||||||||||||||| ||| |||||||||||||||| |||  |||||||    
26812846 atctaatgtagattcccactcttcaatactctttccaaacaagttggaacccactacttctatagctaatggaaggccagaagtatattttactgc 26812751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 27664101 - 27664164
Alignment:
255 ctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    ||||| |||||||||| ||||| ||||||||||||| |||||| ||||||||||||||||||||    
27664101 ctatactctttccaaacaagttggaacccactacttttaaagctaatggaaggccagaagcata 27664164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 318
Target Start/End: Complemental strand, 29469651 - 29469444
Alignment:
111 atttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatcttttt 210  Q
    ||||||||||||||||||||||  ||||||| |||||||||  || ||| |||| || ||||||||||||||| | ||  ||||||   || ||||||||    
29469651 atttatatcctttgaagcagcaggcaatgtcaagaaaaacagacttctcttcttcctgcaaagcatcaaagctaagttgtagtatcgtttggatcttttt 29469552  T
211 aatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggcca 310  Q
    |   |||||||||  ||| |||||||||||| |||| |||| | | ||  ||||   ||| ||||  ||||| |  ||||| ||||||| ||||||||||    
29469551 atcaggaatcctttcataacgatctaatgcatatttacattgttcaattgtcttattaaaaaagtgagaacctatgacttccaaagccagtggaaggcca 29469452  T
311 gaagcata 318  Q
    ||||||||    
29469451 gaagcata 29469444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 443 - 511
Target Start/End: Complemental strand, 26812635 - 26812567
Alignment:
443 atcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
    |||||||||| |  |||||||||||||||||||||||||| ||| |||||||| |||||||||| ||||    
26812635 atcccatgacatgatagcaaatgtctgtctcgagtggtaatgatgactctacttccaggaccgagccaa 26812567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 264 - 318
Target Start/End: Complemental strand, 25075153 - 25075099
Alignment:
264 ttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    ||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||    
25075153 ttccaaacaagttggaacccacaacttctaaagctaatggaaggccagaagcata 25075099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 120 - 318
Target Start/End: Complemental strand, 26825249 - 26825051
Alignment:
120 ctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaat 219  Q
    |||||||||| ||| |||||||||| |||||| | || |  ||||  |||||||||||| |||||||| |||||||||| || ||||||||    |||||    
26825249 ctttgaagcaacaagcaatgtcgaggaaaacactttgttgctcttcttccaaagcatcatagcttactctaagtatctcttggatctttttgtcaggaat 26825150  T
220 ccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    ||||  ||| | ||||||||||   ||||||  |  |||  |||||||||| || || |||||||||| ||||||  | || |||||||| ||||||||    
26825149 cctttcatatccatctaatgcacccttccatatttgtatgctctttccaaacaaattggaacccactatttctaatactaagggaaggcccgaagcata 26825051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 73 - 195
Target Start/End: Original strand, 27530009 - 27530131
Alignment:
73 accataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaa 172  Q
    |||||||| |||||||||||| ||||  |  |||  | ||||| | ||||||||||| ||| ||||||| ||||| ||| | ||||| ||||||||||||    
27530009 accataatgagcatgaagtatttctttgacctctggccatttacaccctttgaagcaacaagcaatgtctagaaagacactttgctcttctttctccaaa 27530108  T
173 gcatcaaagcttactttaagtat 195  Q
    | |||| |||| |||||||||||    
27530109 gaatcatagctcactttaagtat 27530131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 442 - 511
Target Start/End: Complemental strand, 29827094 - 29827025
Alignment:
442 aatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
    ||||||||||||| |||||||||||  |||||||||||||| ||||||| | || |||||||| ||||||    
29827094 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaa 29827025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 318
Target Start/End: Complemental strand, 26862963 - 26862812
Alignment:
167 tccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttc 266  Q
    |||||||||||| |||||||||||||||||   || |||| |||| | |||||| ||  ||||| ||||||||   ||| ||||||| | ||  ||||||    
26862963 tccaaagcatcatagcttactttaagtatcctttggatctctttattgggaatcttttcatacccatctaatgtgcattgccattcttccatgctctttc 26862864  T
267 caaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||| ||||| |||||||||| ||| | | | || |||||||| ||||||||    
26862863 caaacaagttagaacccactatttcgagaactaacggaaggccggaagcata 26862812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 26938345 - 26938264
Alignment:
234 ctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagc 315  Q
    |||||| ||||| ||||||| |||||  ||||||||| || |  ||||| || ||||||||||| |||||||||||||||||    
26938345 ctaatgtagattcccattctgctatacactttccaaacaaatgggaacctacaacttctaaagctaatggaaggccagaagc 26938264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 29523336 - 29523255
Alignment:
115 atatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatc 196  Q
    ||||||||||||||| ||| |||| |||||||||| | |||||  ||||||||| |||||||||||  |  |||||||||||    
29523336 atatcctttgaagcaacaaacaatatcgagaaaaatactctgcgtatctttctctaaagcatcaaatatatctttaagtatc 29523255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 2186356 - 2186064
Alignment:
20 atctttttgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatc 119  Q
    |||||| |||| ||||||||| ||||||| |  || |||| ||| ||||| | |  ||||| ||||| |||||||||||  |  |||| || | || |||    
2186356 atctttatgagtgatttttcaaccaacactccaatatgatttttgatgcaataagtataatgagcatcaagtatatcttggaactcttccagtctacatc 2186257  T
120 ctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaat 219  Q
    |||||||  | ||| ||||||||||||| | | |||  || || | || ||||||||||||||| |||||||||||||  || || ||||||     | |    
2186256 ctttgaaaaaacaagcaatgtcgagaaagagactcttatcttcctcctgcaaagcatcaaagctgactttaagtatctgttggatgtttttaggaacagt 2186157  T
220 ccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccaga 312  Q
    ||||  ||| ||| | |||| |||  |||||||  || ||  ||||||| | ||||  |||||||||||||||||||| ||||||||||||||    
2186156 cctttcatatcgagccaatgtagaactccattcgtctttagactttccagacaagtcagaacccactacttctaaagctaatggaaggccaga 2186064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 499
Target Start/End: Original strand, 26892649 - 26892721
Alignment:
427 ttcatatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactacca 499  Q
    |||||||| | |||||||   |||||||  |||||||| |||||||||||| ||||||||||||| |||||||    
26892649 ttcatatgttttttcaatatgatgacttgctagcaaatttctgtctcgagtagtaacgatcactcgactacca 26892721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 511
Target Start/End: Original strand, 27592020 - 27592164
Alignment:
367 atttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatatgctctttcaatcccatgactttttagcaaatgt 466  Q
    |||||| ||||  |||||||||||||||||||||||||| ||| |||| ||||    || | |||||| | |||| ||||||||||  | ||| || |||    
27592020 atttttaaaagccttccacctcaacaattcaagagcttctgtcccattcaactcttctactgcatatgttttttctatcccatgacagtctagtaagtgt 27592119  T
467 ctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
     | ||||| ||||| | ||| ||||| || |||||||||||||||    
27592120 ttatctcgggtggtgatgatgactctgcttccaggaccgaaccaa 27592164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 419
Target Start/End: Original strand, 27676619 - 27676671
Alignment:
367 atttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaact 419  Q
    |||||| ||||  |||||||||||||||||||||||||| |||||||| ||||    
27676619 atttttaaaagccttccacctcaacaattcaagagcttctgtctcattcaact 27676671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 483
Target Start/End: Complemental strand, 26938143 - 26938096
Alignment:
436 tctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaac 483  Q
    ||||||||||||||||| |  |||||||||| ||||||||||||||||    
26938143 tctttcaatcccatgacatgatagcaaatgtttgtctcgagtggtaac 26938096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 25484535 - 25484413
Alignment:
74 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaag 173  Q
    ||||||| |||||||||||| | ||  | || | || ||||||| ||||||||| | ||| ||||||| ||||| ||| |||| || | || || |||||    
25484535 ccataatgagcatgaagtattttttttacttttgtccatttataccctttgaagtaacaagcaatgtctagaaagacactctgatccttttccttcaaag 25484436  T
174 catcaaagcttactttaagtatc 196  Q
    ||||| ||||||||| |||||||    
25484435 catcatagcttacttgaagtatc 25484413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 25512367 - 25512245
Alignment:
74 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaag 173  Q
    ||||||| |||||||||||| | ||  | || | || ||||||| ||||||||| | ||| ||||||| ||||| ||| |||| || | || || |||||    
25512367 ccataatgagcatgaagtattttttttacttttgtccatttataccctttgaagtaacaagcaatgtctagaaagacactctgatccttttccttcaaag 25512268  T
174 catcaaagcttactttaagtatc 196  Q
    ||||| ||||||||| |||||||    
25512267 catcatagcttacttgaagtatc 25512245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 26057398 - 26057276
Alignment:
74 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaag 173  Q
    ||||||| |||||||||||| | || ||  | | || ||||| | ||||||||||| ||| ||||||| ||||| ||| |||| || | || || |||||    
26057398 ccataatgagcatgaagtatttttttaacctttgtccatttacaccctttgaagcaacaagcaatgtctagaaagacactctgatccttttccttcaaag 26057299  T
174 catcaaagcttactttaagtatc 196  Q
    ||||| ||||||||| |||||||    
26057298 catcatagcttacttgaagtatc 26057276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 26077368 - 26077246
Alignment:
74 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaag 173  Q
    ||||||| |||||||||||| | || ||  | | || ||||| | ||||||||||| ||| ||||||| ||||| ||| |||| || | || || |||||    
26077368 ccataatgagcatgaagtatttttttaacctttgtccatttacaccctttgaagcaacaagcaatgtctagaaagacactctgatccttttccttcaaag 26077269  T
174 catcaaagcttactttaagtatc 196  Q
    ||||| ||||||||| |||||||    
26077268 catcatagcttacttgaagtatc 26077246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 27215928 - 27215806
Alignment:
74 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaag 173  Q
    |||||||  ||||||||||||||||  |  | | || ||||| | ||||||||||| ||| ||||||| ||||| ||| ||| ||| | || ||||| ||    
27215928 ccataatgggcatgaagtatatctttgacctttgtccatttacaccctttgaagcaacaagcaatgtctagaaagacactcttctccttttcctccagag 27215829  T
174 catcaaagcttactttaagtatc 196  Q
    ||||| |||| ||||||||||||    
27215828 catcatagctgactttaagtatc 27215806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 511
Target Start/End: Original strand, 27530370 - 27530444
Alignment:
437 ctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
    ||||| ||||||||| | ||||| || ||| ||| |||||| |||| ||| |||||||| |||||||||||||||    
27530370 ctttctatcccatgaatctttagtaagtgtttgtttcgagtagtaatgatgactctactcccaggaccgaaccaa 27530444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 327
Target Start/End: Original strand, 29476962 - 29477024
Alignment:
265 tccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgc 327  Q
    |||||| ||| ||||||| | |||||| || ||||||||||| || |||||||||||||||||    
29476962 tccaaacaagcttgaacctattacttccaaggccaatggaagcccggaagcataagttactgc 29477024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 26144299 - 26144222
Alignment:
119 cctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatc 196  Q
    ||||||||||| ||| ||||||| ||||| ||| |||| || | || || |||||||||| ||||||||| |||||||    
26144299 cctttgaagcaacaagcaatgtctagaaagacactctgatccttttccttcaaagcatcatagcttacttgaagtatc 26144222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 414
Target Start/End: Complemental strand, 27680119 - 27680086
Alignment:
381 tccacctcaacaattcaagagcttcggtctcatt 414  Q
    ||||||||||||||||||||||||| ||||||||    
27680119 tccacctcaacaattcaagagcttctgtctcatt 27680086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #66
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 28228455 - 28228399
Alignment:
167 tccaaagcatcaaagcttactttaagtatctcctgt-atctttttaatcggaatcctt 223  Q
    ||||||||||||||||||| ||||||||||| |||| || |||||||| |||||||||    
28228455 tccaaagcatcaaagcttattttaagtatct-ctgtgatatttttaatgggaatcctt 28228399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #67
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 27663963 - 27664043
Alignment:
117 atcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatct 197  Q
    ||||||||||||| ||| |||| || | ||| ||| |||| |  ||||  ||||||| |||||||||||||||||||||||    
27663963 atcctttgaagcaacaagcaatatccaaaaagacactctgttgttcttcttccaaagtatcaaagcttactttaagtatct 27664043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #68
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 28490202 - 28490270
Alignment:
83 gcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaaca 151  Q
    ||||||||||| ||||| | |  |||||||||  ||||||||||||| ||| ||||||| |||||||||    
28490202 gcatgaagtatttcttcgactcttttcaatttccatcctttgaagcaacaagcaatgtcaagaaaaaca 28490270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #69
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 29802612 - 29802680
Alignment:
83 gcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaaca 151  Q
    ||||||||||| ||||| | |  |||||||||  ||||||||||||| ||| ||||||| |||||||||    
29802612 gcatgaagtatttcttcgactcttttcaatttccatcctttgaagcaacaagcaatgtcaagaaaaaca 29802680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 511
Target Start/End: Original strand, 56945 - 57437
Alignment:
19 gatctttttgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatat 118  Q
    ||||||| ||||||||||||||| |||||| || ||||||| |||||||||| ||||||||| |||||||||||||||||||| |||||| || | | ||    
56945 gatctttatgagagatttttcatgcaacactctaatttgatgtttcatgcagctaccataatgagcatgaagtatatcttcaacttcttttaaatcacat 57044  T
119 cctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaa 218  Q
    ||||  ||| | |||  |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| ||||    
57045 ccttctaagaaacaagaaatgtcgagaaaaacattcttctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttttaatgggaa 57144  T
219 tccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||||  |||| ||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||    
57145 tcctttcatactgatttaatgcagatttccattctcctatattctttccaaacaagttcgaacccactacttctaaggccaatggaaggcctgaagcata 57244  T
319 agttactgcacaacgtaaaacaccatcgaaatttgaatccatcttattatttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaac 418  Q
    ||||||||||    |||||||    |||||||||| ||  |  || ||||||||||||| |||||||||||||||||||||||||||  |||||||||||    
57245 agttactgcaaggtgtaaaacgttgtcgaaatttggattgactttgttatttttgaaagcattccacctcaacaattcaagagcttctttctcatttaac 57344  T
419 ttaggtaattcatatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
    |||  || |||||||||||||||||||||||||| |  |||||| |||  |||||||||||||| ||||||| ||||||||||||| ||||||    
57345 ttatctatttcatatgctctttcaatcccatgacctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaa 57437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 113 - 327
Target Start/End: Complemental strand, 3281096 - 3280882
Alignment:
113 ttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaa 212  Q
    ||||| ||||| ||||| ||| ||||||||||||||||| | ||||| |||| ||||||||||||||| || ||||||||||||| ||| |||| ||||     
3281096 ttataccctttaaagcaacaagcaatgtcgagaaaaacactttgctcgtcttcctccaaagcatcaaaactcactttaagtatcttctgaatctctttat 3280997  T
213 tcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccaga 312  Q
    | |||||||||  ||| ||||| ||   ||| ||||| |||  ||||||||||||||| ||||| ||||| | ||||||||| |||||||||||||||||    
3280996 taggaatcctttcatatcgatccaacaaagaattccactcttttatattctttccaaacaagttggaacctaatacttctaatgccaatggaaggccaga 3280897  T
313 agcataagttactgc 327  Q
    ||||||| |||||||    
3280896 agcataatttactgc 3280882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 17992083 - 17992165
Alignment:
236 aatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||||| ||||||| ||| ||| |  ||||||||| ||||| |||||||||||||||||||| ||||| ||||||| ||||||    
17992083 aatgcacatttccaatctgctaaacactttccaaacaagttggaacccactacttctaaagctaatgggaggccagcagcata 17992165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 329
Target Start/End: Complemental strand, 17662589 - 17662492
Alignment:
232 atctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcac 329  Q
    |||||||| |||||||||| |  ||| | | || ||||| ||||  ||||| | |||||| ||||||||||||||||||||||||||||  |||||||    
17662589 atctaatgaagatttccatacatctaaacttttgccaaacaagtgagaacctattacttccaaagccaatggaaggccagaagcataagaaactgcac 17662492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 329
Target Start/End: Complemental strand, 17713615 - 17713518
Alignment:
232 atctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcac 329  Q
    |||||||| |||||||||| |  ||| | | || ||||| ||||  ||||| | |||||| ||||||||||||||||||||||||||||  |||||||    
17713615 atctaatgaagatttccatacatctaaacttttgccaaacaagtgagaacctattacttccaaagccaatggaaggccagaagcataagaaactgcac 17713518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 499
Target Start/End: Complemental strand, 3280770 - 3280710
Alignment:
439 ttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactacca 499  Q
    ||||||||||||||||  || ||| ||| ||||||||||||||| |||||| |||||||||    
3280770 ttcaatcccatgacttgataacaagtgtttgtctcgagtggtaatgatcaccctactacca 3280710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 59 - 511
Target Start/End: Complemental strand, 16692358 - 16691906
Alignment:
59 tatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgct 158  Q
    ||||| ||||| |||||||||| ||||  |||||||   |||| |||  |||| | ||||||||||||||| ||| ||||||| | ||||||| |||  |    
16692358 tattttatgcatttaccataatgagcacaaagtataaactcaacttccgtcaaatcatatcctttgaagcaacaagcaatgtccaaaaaaacactctttt 16692259  T
159 catctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctat 258  Q
    |||||| |||||||  |||||| |||||||||||||| |  || ||   ||||   ||||||| |  ||| ||||| |||| ||||||||||||| ||||    
16692258 catcttcctccaaactatcaaaacttactttaagtattttgtgaattcgtttaccaggaatccattcatatcgatcaaatgtagatttccattcttctat 16692159  T
259 attctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacaccatcgaaatttgaatcc 358  Q
    |||||||||||| ||||| || || |||||||||||||| ||||||||||||||||||||||||||  || |   |||||     |||||| |||||||     
16692158 attctttccaaacaagttagatcctactacttctaaagctaatggaaggccagaagcataagttacaacatattttaaaatgtactcgaaacttgaatcg 16692059  T
359 atcttattatttttgaaagaattccacctcaacaattcaagagcttcggtct-catttaacttaggtaattcatatgctctttcaatcccatgacttttt 457  Q
    |  || |||||||| ||||  ||||||||||| | ||| ||||||||  ||| |||||||   |   | |||||||  ||| ||||| ||||||||| ||    
16692058 actttgttatttttaaaagtcttccacctcaatagttctagagcttc-ttctccatttaaaccatccacttcatatattctatcaataccatgacttgtt 16691960  T
458 agcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
    || || ||| ||||||||||||||| ||| |||||||| |||||||| ||||||    
16691959 agtaagtgtttgtctcgagtggtaatgatgactctacttccaggaccaaaccaa 16691906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 7e-38; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 74 - 318
Target Start/End: Original strand, 28126381 - 28126625
Alignment:
74 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaag 173  Q
    ||||||| |||||||||||| | |||||  ||| ||||| |||| ||||||||||||||| | || |||||||| ||| | |||||||||| ||||||||    
28126381 ccataatgagcatgaagtatcttttcaacctctgtcaatctataccctttgaagcagcaagctatatcgagaaagacactttgctcatcttcctccaaag 28126480  T
174 catcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataa 273  Q
    ||||| |||||| ||||| |||||| || ||||||||| | |||||| ||  ||| | |||||||| |   ||||||||| ||||  |||||||||||||    
28126481 catcatagcttagtttaaatatctcttggatctttttatttggaatcttttcatatccatctaatgtacccttccattcttctatgctctttccaaataa 28126580  T
274 gtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    ||| |||||||||| ||||| | | || |||||||| ||||||||    
28126581 gttggaacccactatttctataactaagggaaggcctgaagcata 28126625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 115 - 329
Target Start/End: Original strand, 267087 - 267301
Alignment:
115 atatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatc 214  Q
    ||||||||||||||| ||| ||||||| | ||| ||| ||||||| ||||  |||||| ||||| |||| |||||||||||||  || |||| |||| |     
267087 atatcctttgaagcaacaagcaatgtctaaaaagacactctgctcctcttcttccaaaccatcatagctcactttaagtatcttttggatctctttattg 267186  T
215 ggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaag 314  Q
    |||||| |   ||||| |||||||| |   ||||||||| ||||  |||||||||| ||||| |||||||| | ||||||| | || |||||||||||||    
267187 ggaatcttatcatacccatctaatgtacccttccattcttctatgctctttccaaacaagttagaacccacaatttctaaaactaacggaaggccagaag 267286  T
315 cataagttactgcac 329  Q
    ||||||  |||||||    
267287 cataagcaactgcac 267301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 108 - 293
Target Start/End: Original strand, 28132241 - 28132426
Alignment:
108 tcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctt 207  Q
    ||||| |||| || |||||||| ||| | || || ||||| ||| | ||||| |||| ||||||||||||  | |||||||||| |||||| || |||||    
28132241 tcaatctataccccttgaagcaacaagctatatccagaaagacactttgctcctcttcctccaaagcatcgtaacttactttaaatatctcatggatctt 28132340  T
208 tttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttcta 293  Q
    |||| | |||||| ||  ||| | |||||||| | | ||||||||| ||||  ||||||||||||||||||||||||||| |||||    
28132341 tttattaggaatcttttcatatccatctaatgtacacttccattcttctatgctctttccaaataagtttgaacccactatttcta 28132426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 317
Target Start/End: Original strand, 5922216 - 5922418
Alignment:
115 atatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatc 214  Q
    ||||||||||||||| ||| |||| || ||||||||| | | ||| ||||  ||||||||||||||||| ||||| || | |   || |||||||||       
5922216 atatcctttgaagcaacaagcaatatcaagaaaaacacttttctcttcttcttccaaagcatcaaagctcacttttagcaacgtttgcatctttttatca 5922315  T
215 ggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaag 314  Q
    |||||||||  ||| |||||||||| |||||| |||| | |||   | ||   ||||||||  ||||| | ||||||||||||||| |||||||||||||    
5922316 ggaatcctttcataacgatctaatgtagatttacattgttctactgttttatgaaataagtgagaacctattacttctaaagccaaaggaaggccagaag 5922415  T
315 cat 317  Q
    |||    
5922416 cat 5922418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 26137176 - 26137120
Alignment:
262 ctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    ||||||||| ||| | |||||||||||||||||||| || |||||||||||||||||    
26137176 ctttccaaacaagctggaacccactacttctaaagctaacggaaggccagaagcata 26137120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 427 - 504
Target Start/End: Complemental strand, 26137011 - 26136934
Alignment:
427 ttcatatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggacc 504  Q
    |||||||  ||||| ||||||||||| |  |||||||||| ||||||| ||||||| ||| |||||||| ||||||||    
26137011 ttcatatattcttttaatcccatgacatgatagcaaatgtttgtctcgggtggtaatgatgactctactcccaggacc 26136934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 56 - 511
Target Start/End: Original strand, 5089638 - 5090093
Alignment:
56 tgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattct 155  Q
    |||||||||||||| | |||||||| ||||  |||||||| ||| |  || | |||  ||||||||||||| || ||| |||||||||| |||||| |||    
5089638 tgatatttcatgcaataaccataatgagcacaaagtatatattcgacctcatccaagctatatcctttgaaacaacaagcaatgtcgaggaaaacactct 5089737  T
156 gctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcc 255  Q
    |||||| ||   | |||  || |||||| ||| |||||||||  || || | |||| | |||||||||  ||||  ||||| |  ||||||||||| | |    
5089738 gctcatattcacctaaattattaaagctcactataagtatcttttggatttctttattaggaatcctttcatactcatctagtaaagatttccatttttc 5089837  T
256 tatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacaccatcgaaatttgaa 355  Q
    ||||| ||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||  |||    |||||  || ||  || ||| |    
5089838 tatatcctttccaaacaaattggaacccacaacttctaaagccaatggaaggccagaagcataagttaccacacggtttaaaattccttcataacttgga 5089937  T
356 tccatcttattatttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatatgctctttcaatcccatgacttt 455  Q
    |  |   || ||||||| ||||  |||||||| || |||| |||||||||| ||||||||||   |  || ||| |||| | | ||||||||||||| ||    
5089938 ttaacagtactatttttaaaagccttccaccttaataattgaagagcttcgttctcatttaaaccatctacttcgtatgttatatcaatcccatgacatt 5090037  T
456 ttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaa 511  Q
    ||||||| ||| ||||||||||||||| ||| ||||| || ||| |||| ||||||    
5090038 ttagcaagtgtttgtctcgagtggtaatgatgactctgctgccaagaccaaaccaa 5090093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 320
Target Start/End: Complemental strand, 18075238 - 18074991
Alignment:
73 accataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaa 172  Q
    |||||||| |||||||||||| ||||  |  | || | ||||| | ||||||||||| ||| ||||||| ||||| ||| | ||||| |||| |||||||    
18075238 accataatgagcatgaagtatttctttgaccttttcccatttacaacctttgaagcaacaagcaatgtctagaaagacactttgctcctcttcctccaaa 18075139  T
173 gcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaata 272  Q
    | |||| |||| |||||||||||    || |||| |||| | |||||| ||  ||||| |||||||| |   || |||||| |||| ||||||||||| |    
18075138 gaatcatagctcactttaagtattctttggatctctttattgggaatcttttcataccaatctaatgtattcttgcattcttctatgttctttccaaaca 18075039  T
273 agtttgaacccactacttctaaagccaatggaaggccagaagcataag 320  Q
    |||| |||||||||| ||||| | | |  |||||||||||||||||||    
18075038 agttagaacccactatttctataactaccggaaggccagaagcataag 18074991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 318
Target Start/End: Original strand, 18678355 - 18678506
Alignment:
167 tccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttc 266  Q
    |||||||||||||||||||||||||||||||  || || | || |   ||||| |||  ||||  |||||||| ||| |  ||||||   ||||||||||    
18678355 tccaaagcatcaaagcttactttaagtatcttttggatatcttcatgtggaattctttcatacttatctaatgtagactcacattctgaaatattctttc 18678454  T
267 caaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||| ||||| |||||||||||||||| ||| ||||||||||||||||||||    
18678455 caaacaagttggaacccactacttctatagctaatggaaggccagaagcata 18678506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 168 - 318
Target Start/End: Original strand, 18722881 - 18723031
Alignment:
168 ccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttcc 267  Q
    ||||||||||||||||||||||||||||||  || || | || |   ||||| |||  ||||  |||||||| ||| |  |||||| | ||| |||||||    
18722881 ccaaagcatcaaagcttactttaagtatcttttggatatcttcatctggaattctttcatacatatctaatgtagactcacattctgcaatactctttcc 18722980  T
268 aaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    ||| ||||| |||||||||||||||| ||| ||||||||||||||||||||    
18722981 aaacaagttggaacccactacttctatagctaatggaaggccagaagcata 18723031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 167 - 318
Target Start/End: Original strand, 18654272 - 18654423
Alignment:
167 tccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttc 266  Q
    |||||||||||||| ||||||||||||||||  || || | || |   ||||| |||  ||||  |||||||| |||||  |||||| | ||| ||||||    
18654272 tccaaagcatcaaaacttactttaagtatcttttggatatcttcatgtggaattctttcatacttatctaatgtagattcacattctgcaatactctttc 18654371  T
267 caaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||| ||||| |||||||| ||||||| ||| ||||||||||||||||||||    
18654372 caaacaagttggaacccacgacttctatagctaatggaaggccagaagcata 18654423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 167 - 318
Target Start/End: Original strand, 18688421 - 18688572
Alignment:
167 tccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttc 266  Q
    |||||||||||||||||||||||||||||||  || || | ||   | ||||| |||  ||||  |||||||| ||| |  ||||||   ||| ||||||    
18688421 tccaaagcatcaaagcttactttaagtatcttttggatatcttcgtttggaattctttgatacttatctaatgtagactcacattctgaaatactctttc 18688520  T
267 caaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||| ||||| |||||||||||||||| ||| ||||||||||||||||||||    
18688521 caaacaagttggaacccactacttctatagctaatggaaggccagaagcata 18688572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 167 - 318
Target Start/End: Original strand, 18698195 - 18698346
Alignment:
167 tccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttc 266  Q
    |||||||||||||||||||||||||||||||  || || | || |   ||||| |||  ||||  |||||||| ||| |  |||||| | | | ||||||    
18698195 tccaaagcatcaaagcttactttaagtatcttttggatatcttcatgtggaattctttcatacttatctaatgtagagtcacattctgcaaaactctttc 18698294  T
267 caaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||| ||||| |||||||||||||||| ||| ||||||||||||||||||||    
18698295 caaacaagttggaacccactacttctagagctaatggaaggccagaagcata 18698346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 167 - 318
Target Start/End: Original strand, 18730299 - 18730450
Alignment:
167 tccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttc 266  Q
    |||||||||||||||||||||||||||||||  || || | || |   ||||| |||  ||||  |||||||| ||| |  |||||| | | | ||||||    
18730299 tccaaagcatcaaagcttactttaagtatcttttggatatcttcatgtggaattctttcatacttatctaatgtagaatcacattctgcaaaactctttc 18730398  T
267 caaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    |||| ||||| |||||||||||||||| ||| ||||||||||||||||||||    
18730399 caaacaagttggaacccactacttctagagctaatggaaggccagaagcata 18730450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 28 - 318
Target Start/End: Complemental strand, 291 - 1
Alignment:
28 gagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaag 127  Q
    ||||||||||||| ||||||| |  |  |||| ||| ||||| |  ||||||| |||| | |||||||||||||  || ||| ||  | |||||||||||    
291 gagagatttttcagccaacactcctagatgatgttttatgcaatggccataatgagcacgtagtatatcttcaaactccttccatccacatcctttgaag 192  T
128 cagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctat 227  Q
    || ||  ||||||| ||||||||| | ||||  |||| ||||||||||||| ||||||||||||||||||| || ||||||||| | |||||| ||  ||    
191 caacaggcaatgtctagaaaaacactttgctgctcttcctccaaagcatcatagcttactttaagtatctcgtggatctttttattgggaatcttttcat 92  T
228 accgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    | | |||||||| |   ||||||||| ||||  |||||||||| ||||| |||||||||| ||||||| | || |||||||| ||||||||    
91 atccatctaatgtacccttccattcttctatcgtctttccaaacaagttggaacccactatttctaaaactaagggaaggcccgaagcata 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 74 - 318
Target Start/End: Original strand, 12381 - 12625
Alignment:
74 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaag 173  Q
    ||||||| |||| ||||||||| |||||  || ||| ||  | ||||||||||||| ||  ||||||| ||||||||| | ||||  |||| ||||||||    
12381 ccataatgagcacgaagtatatattcaaactccttccatccacatcctttgaagcaacaggcaatgtctagaaaaacactttgctgctcttcctccaaag 12480  T
174 catcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataa 273  Q
    ||||| ||||||||||||||||||| || ||||||||| | |||||| ||  ||| | |||||||| |   ||||||||| ||||  |||||||||| ||    
12481 catcatagcttactttaagtatctcgtggatctttttattgggaatcttttcatatccatctaatgtacccttccattcttctatcgtctttccaaacaa 12580  T
274 gtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    ||| |||||||||| ||||||| | || |||||||| ||||||||    
12581 gttggaacccactatttctaaaactaagggaaggcccgaagcata 12625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 117 - 318
Target Start/End: Original strand, 3461 - 3662
Alignment:
117 atcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcgg 216  Q
    ||||||||||||| ||  ||||||| ||||||||| | ||||  |||| ||||||||||||| ||||||||||||||||||  || ||||||||| | ||    
3461 atcctttgaagcaacaggcaatgtctagaaaaacactttgctgctcttcctccaaagcatcatagcttactttaagtatctggtggatctttttattggg 3560  T
217 aatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagca 316  Q
    |||| ||  ||| | |||||||| |   ||||||||| ||||  |||||||||| ||||| |||||||||| ||||||| | || |||||||| ||||||    
3561 aatcttttcatatccatctaatgtacccttccattcttctatcgtctttccaaacaagttggaacccactatttctaaaactaagggaaggcccgaagca 3660  T
317 ta 318  Q
    ||    
3661 ta 3662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 482
Target Start/End: Original strand, 3781 - 3826
Alignment:
437 ctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaa 482  Q
    ||||| |||||||||||| ||||||| ||| |||||||||||||||    
3781 ctttctatcccatgacttcttagcaagtgtttgtctcgagtggtaa 3826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 28 - 318
Target Start/End: Complemental strand, 9009 - 8719
Alignment:
28 gagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaag 127  Q
    ||||||||||||| ||||||| |  |  |||| ||| ||||| |  ||||||| |||| | |||||||||||||  || ||| ||  | |||||||||||    
9009 gagagatttttcagccaacactcctagatgatgttttatgcaatggccataatgagcacgtagtatatcttcaaactccttccatccacatcctttgaag 8910  T
128 cagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctat 227  Q
    || ||  ||||||| ||||||||| | ||||  |||| ||||||||||||| | ||||||||||||||||| || ||||||||| | |||||| ||  ||    
8909 caacaggcaatgtctagaaaaacactttgctgctcttcctccaaagcatcataacttactttaagtatctcgtggatctttttattgggaatcttttcat 8810  T
228 accgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    | | |||||||| |   ||||||||| ||||  |||||||||| ||||| |||||||||| ||||||| | || |||||||| ||||||||    
8809 atccatctaatgtacccttccattcttctatcgtctttccaaacaagttggaacccactatttctaaaactaagggaaggcccgaagcata 8719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 111 - 318
Target Start/End: Original strand, 2282 - 2489
Alignment:
111 atttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatcttttt 210  Q
    ||||| ||| ||||||||| ||| ||||||| ||||| ||| | ||||  |||| ||||||||||||| | ||||||||||||||||  || |||| |||    
2282 atttacatcttttgaagcaacaagcaatgtctagaaagacactttgctgctcttcctccaaagcatcataacttactttaagtatcttttggatctcttt 2381  T
211 aatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggcca 310  Q
    | | ||||||||   ||||| |||||||| |   ||||||||  |||| ||||||||| ||||||| |||||||||| ||||| | | || |||||||||    
2382 attgggaatcctgtcatacccatctaatgtattcttccattcctctatgttctttccagataagttagaacccactatttctataactaacggaaggcca 2481  T
311 gaagcata 318  Q
    ||||||||    
2482 gaagcata 2489  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 137 - 329
Target Start/End: Complemental strand, 31906467 - 31906275
Alignment:
137 atgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatcta 236  Q
    ||||| ||||||||| | | |||||||| ||||||||||||||| |||||||| ||||| |  || |||| |||| | |||||  ||  ||| |||| ||    
31906467 atgtcaagaaaaacacttttctcatcttcctccaaagcatcaaaacttactttgagtatattttggatctctttatttggaatgatttcatatcgatgta 31906368  T
237 atgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcac 329  Q
    ||||||||| |||||||  |||||||||||||||||| || ||||| |  |||   |||||||||||||| ||||||||||||  ||||||||    
31906367 atgcagattcccattcttgtatattctttccaaataaattggaaccaataactatcaaagccaatggaagtccagaagcataacctactgcac 31906275  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 135 - 329
Target Start/End: Complemental strand, 35984714 - 35984520
Alignment:
135 caatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatc 234  Q
    ||||||| ||||||||| | |||||||||| ||| ||||||||||| ||||||||||||||||  || || | |||| | |||||  ||  |||||| |     
35984714 caatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcataccggtg 35984615  T
235 taatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcac 329  Q
    ||||||||||| ||| |||  ||   ||||||||||||| || ||||| | ||||   |||||||||||||| ||||||||||| | ||||||||    
35984614 taatgcagattcccactcttgtactgtctttccaaataaattggaacctattactatcaaagccaatggaagtccagaagcatatgctactgcac 35984520  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 318
Target Start/End: Original strand, 29272589 - 29272788
Alignment:
119 cctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaa 218  Q
    ||||||||||| ||| ||||||| ||||| ||| | || |  ||||  |||||||||||| | ||||||||||||||||  || ||| ||||| | ||||    
29272589 cctttgaagcaacaagcaatgtccagaaagacactttgttgctcttcttccaaagcatcataacttactttaagtatctggtggatccttttattgggaa 29272688  T
219 tccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 318  Q
    || ||  ||| | |||||||| |   ||||||||| ||||  |||||||||| ||||| |||||||||| ||||||| | || |||||||| ||||||||    
29272689 tcttttcatatccatctaatgtacccttccattcttctatcctctttccaaacaagttggaacccactatttctaaaactaagggaaggcccgaagcata 29272788  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 427 - 504
Target Start/End: Complemental strand, 16441179 - 16441102
Alignment:
427 ttcatatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggacc 504  Q
    |||||||| |||||||| ||||||||||  |||||| ||| |||| ||||| |||| ||| ||||| |||||||||||    
16441179 ttcatatgttctttcaaccccatgacttgctagcaactgtttgtcccgagttgtaatgataactctgctaccaggacc 16441102  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 16353696 - 16353779
Alignment:
109 caatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaag 192  Q
    ||||||| |||||| ||| |||||| ||||||| |||||||| |||| ||||||||  ||||| | | || |||||||||||||    
16353696 caatttacatccttcgaaacagcaagcaatgtcaagaaaaactttcttctcatcttcatccaaggaaacatagcttactttaag 16353779  T

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Target: scaffold0003 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 320
Target Start/End: Complemental strand, 61046 - 60799
Alignment:
73 accataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaa 172  Q
    |||||||| |||||||||||| ||||  |  | || | ||||| | ||||||||||| ||| ||||||| ||||| ||| | ||||| |||| |||||||    
61046 accataatgagcatgaagtatttctttgaccttttcccatttacaacctttgaagcaacaagcaatgtctagaaagacactttgctcctcttcctccaaa 60947  T
173 gcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaata 272  Q
    | |||| |||| |||||||||||    || |||| |||| | |||||| ||  ||||| |||||||| |   || |||||| |||| ||||||||||| |    
60946 gaatcatagctcactttaagtattctttggatctctttattgggaatcttttcataccaatctaatgtattcttgcattcttctatgttctttccaaaca 60847  T
273 agtttgaacccactacttctaaagccaatggaaggccagaagcataag 320  Q
    |||| |||||||||| ||||| | | |  |||||||||||||||||||    
60846 agttagaacccactatttctataactaccggaaggccagaagcataag 60799  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 27 - 183
Target Start/End: Complemental strand, 615319 - 615163
Alignment:
27 tgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaa 126  Q
    |||||||||||||  |||||||| | || |||| |||||||   | |||||||| |||||||||||| |||||||    | |||||||  ||||||||||    
615319 tgagagatttttccaccaacacattaatgtgatctttcatgatatcaccataatgagcatgaagtatttcttcaacccttgtcaatttccatcctttgaa 615220  T
127 gcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagct 183  Q
    ||| ||| ||||||| |||||||||  ||  || ||||||| ||| |||||||||||    
615219 gcaacaagcaatgtcaagaaaaacaaacttttcttctttctgcaaggcatcaaagct 615163  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 238605 - 238682
Alignment:
108 tcaatttatatcctttgaagcagcaaccaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagctta 185  Q
    |||||||||||||||||||||| ||  ||||||| ||||||||| | | ||| |||| ||  ||||||||| ||||||    
238605 tcaatttatatcctttgaagcaacatgcaatgtcaagaaaaacaattttctcttcttcctgtaaagcatcatagctta 238682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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