View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5540-Insertion-2 (Length: 1101)
Name: NF5540-Insertion-2
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5540-Insertion-2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 768; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 768; E-Value: 0
Query Start/End: Original strand, 8 - 814
Target Start/End: Complemental strand, 44884653 - 44883844
Alignment:
| Q |
8 |
ctcctcgtcatcattatcataatgacacatctgatctcctcctcatccctcacgtgcctggctccaaactccgcctcatgtgcagctacggtggccacat |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44884653 |
ctcctcgtcatcattatcataatgacacatctgatctcctcctcatccctcacgtgcctggctccaaactccgcctcatgtgcagctacggcggccacat |
44884554 |
T |
|
| Q |
108 |
catgccacgtgacaactccctctactacgttggtggcgacactcgtatcgtcgccgttgaccgtcactcttccttatcacacctcttttctcacctctct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884553 |
catgccacgtgacaactccctctactacgtcggtggcgacactcgtatcgtcgccgttgaccgtcactcttccttatcacacctcttttctcacctctct |
44884454 |
T |
|
| Q |
208 |
cgcactctccttcatggaagaagacctttcactctcaagtaccatcttcccaatgaagaccttgacaacctcatcactgtttccactgatgaagacctcc |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884453 |
cgcactctccttcatggaagaagacctttcactctcaagtaccatcttcccaatgaagaccttgacaacctcatcactgtttccactgatgaagacctcc |
44884354 |
T |
|
| Q |
308 |
agaatatgatagatgagtatgatcgtttgtcttcaaacccttctccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884353 |
agaatatgatagatgagtatgatcgtttgtcttcaaacccttctccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgt |
44884254 |
T |
|
| Q |
408 |
ttccatgggaaatggtcacttttataatcatgcgtggtttgtggaagctctcaacaactcagggattctgtctcgtgttgtttcggattctgcagctgct |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44884253 |
ttccatgggaaatggtcacttttataatcatgcatggtttgtggaagctctcaacaactcagggattctgtctcgtgttgtttcagattctgcagctgct |
44884154 |
T |
|
| Q |
508 |
gttgataactgcctcctcaacctcgatgattatgatattaatgcttcaagtaatgacgaaaatactaataataatgttatcaaggagcatttgattgatg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44884153 |
gttgataactgcctcctcaacctcgatgattatgatattagtgcttcaagtaatgacgaaaatactaataataatgttatcaaggagcatttgattgatg |
44884054 |
T |
|
| Q |
608 |
ttgattattcagtgcctgtggaggaggaggaggagaagaacatgtttaattattcaattgctaatcttcgagttcgtgttgatcatgacgatgatggtag |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884053 |
ttgattattcagtgcctgtggaggaggaggaggagaagaacatgtttaattattcaattgctaatcttcgagttcgtgttgatcatgacgatgatggtag |
44883954 |
T |
|
| Q |
708 |
cggggcgaagcaagagcagaggcttaggatggaacaacagcatgataacaactttgataatgtga---agcaaaacgatccttttcttgaatcttcttat |
804 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44883953 |
cggggtgaagcaagagcagaggcttaggatggaacaacagcatgaaaacaactttgataatgtgaagcagcaaaacgatccttttcttgaatcttcttat |
44883854 |
T |
|
| Q |
805 |
tgtcacgatg |
814 |
Q |
| |
|
|||||||||| |
|
|
| T |
44883853 |
tgtcacgatg |
44883844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 810 - 1094
Target Start/End: Complemental strand, 44883806 - 44883521
Alignment:
| Q |
810 |
cgatgatcgaaagcctcctttgccatcgctcattgttcaaccaaggaccaccggagctagccttggtttgccttctccagattcactagcaaggtaatat |
909 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44883806 |
cgatgatcgaaagcctcctttgccgtcgctcattgttcaaccaaggaccaccggagctagccttggtttgccttctccagattcactagcaaggtaatat |
44883707 |
T |
|
| Q |
910 |
tcaactatcataaatctattctattatgcaaatttttatttgtttaattta--tttgtaaggcagtgtcatataaag-ttattcaagtagtttcttgtaa |
1006 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
44883706 |
tcaactatcataaatctattcta-tatgcaaatttttatttgtttaatttaattttgtaaggcagtgtcatataaagtttattcaagtagtttcttgtaa |
44883608 |
T |
|
| Q |
1007 |
tatatatttccacatgttgacgttgttatttgatagatatgattttggctttatgtg-aaagtgatagcagt-atgcatctgcatgtgtg |
1094 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||||||||| | |||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
44883607 |
---atatttccacattttgatgttgttatttgatagatatgatttttggtttatgtgaaaagtgatagcagtgttgcatctgcatgtgtg |
44883521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 1e-74; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 369 - 713
Target Start/End: Original strand, 8994206 - 8994574
Alignment:
| Q |
369 |
cagattgttcctcttcttctcaaaaccagatactgctgtttccatgggaaatggtcacttttataatcatgcgtggtttgtggaagctctcaacaactca |
468 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||| |||| ||||||| ||||||||| |||||||||||||||||| ||||| ||| |
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|
| T |
8994206 |
cagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaatca |
8994305 |
T |
|
| Q |
469 |
gggattctgtctcgtgttgtttcggattctgcagctgctgttgataactgcctcctcaacctcgatgattatgatattaatgcttcaagtaatgacgaaa |
568 |
Q |
| |
|
|||||||| |||||||||||||| | |||||| || | ||| |||||||||||||||||||| |||||||||||| ||| |||||||| ||||| |||| |
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| T |
8994306 |
gggattctctctcgtgttgtttctgtttctgctgcggttgtggataactgcctcctcaaccttgatgattatgatgttagtgcttcaatcaatgatgaaa |
8994405 |
T |
|
| Q |
569 |
atactaataataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtgga------------------ggaggaggaggagaagaacat |
650 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |||||||| | |||||| ||| ||||||||| ||||||| |
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| T |
8994406 |
atactaataat---gttaaaaaggagcatttgattgatgttgactattcagttcttgtggatgatgatgatgaggaggaggaagaggaggaggagaacat |
8994502 |
T |
|
| Q |
651 |
gtttaattattcaattgctaatc---------ttcgagttcgtgttgatcatgacgatgatggtagcggggc |
713 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||| || |||||||||||||| |
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|
| T |
8994503 |
gtttaattattcagttgctaatcttcctgaaattcgagttcgtgttgatcatgatgacgatggtagcggggc |
8994574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 369 - 629
Target Start/End: Original strand, 9028863 - 9029120
Alignment:
| Q |
369 |
cagattgttcctcttcttctcaaaaccagatactgctgtttccatgggaaatggtcacttttataatcatgcgtggtttgtggaagctctcaacaactca |
468 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||| |||| ||||||| ||||||||| |||||||||||||||||| ||||| ||| |
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| T |
9028863 |
cagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaatca |
9028962 |
T |
|
| Q |
469 |
gggattctgtctcgtgttgtttcggattctgcagctgctgttgataactgcctcctcaacctcgatgattatgatattaatgcttcaagtaatgacgaaa |
568 |
Q |
| |
|
|||||||| |||||||||||||| | |||||| || | ||| |||||||||||||||||||| |||||||||||| ||| |||||||| ||||| |||| |
|
|
| T |
9028963 |
gggattctctctcgtgttgtttctgtttctgctgcggttgtggataactgcctcctcaaccttgatgattatgatgttagtgcttcaatcaatgatgaaa |
9029062 |
T |
|
| Q |
569 |
atactaataataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtgga |
629 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||| |||||||| | |||||| |
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|
| T |
9029063 |
atac---taataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtgga |
9029120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 330 - 411
Target Start/End: Original strand, 9019385 - 9019466
Alignment:
| Q |
330 |
tcgtttgtcttcaaacccttctccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgtttcc |
411 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||| ||||| |
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|
| T |
9019385 |
tcgtttgtcttcaaacccgtctccttccccttctcgactcagattgttcatgttcatctcaaaaccagatactgctatttcc |
9019466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 576 - 713
Target Start/End: Original strand, 9007176 - 9007334
Alignment:
| Q |
576 |
taataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtgga------------ggaggaggaggagaagaacatgtttaattattca |
663 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||| | |||||| |||||| |||||| |||||||||||||||||||| |
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|
| T |
9007176 |
taataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtggatgatgatgatgaggaggaagaggaggagaacatgtttaattattca |
9007275 |
T |
|
| Q |
664 |
attgctaatc---------ttcgagttcgtgttgatcatgacgatgatggtagcggggc |
713 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || |||||||||||||| |
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|
| T |
9007276 |
gttgctaatcttcctgaaattcgagttcgtgttgatcatgatgacgatggtagcggggc |
9007334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 627 - 713
Target Start/End: Original strand, 9029136 - 9029231
Alignment:
| Q |
627 |
ggaggaggaggaggagaagaacatgtttaattattcaattgctaatcttc---------gagttcgtgttgatcatgacgatgatggtagcggggc |
713 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| ||| |||||||||||| ||||||||||||||||||| || |||||||||||||| |
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|
| T |
9029136 |
ggaggaagaggaggaggagaacatgtttaattaatcagttgctaatcttcctgaaattcgagttcgtgttgatcatgatgacgatggtagcggggc |
9029231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 30769868 - 30769922
Alignment:
| Q |
227 |
gaagacctttcactctcaagtaccatcttcccaatgaagaccttgacaacctcat |
281 |
Q |
| |
|
||||||| || |||||||||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
30769868 |
gaagaccctttactctcaagtaccagcttccaaatgaagaccttgataacctcat |
30769922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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