View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5540-Insertion-4 (Length: 1070)
Name: NF5540-Insertion-4
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5540-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 8 - 563
Target Start/End: Original strand, 952411 - 952962
Alignment:
| Q |
8 |
agaaaaagaatagttaggtaaacggatatcctctgcatttggggggtctcctacgaccatggcatcggccttcatcatgttcattttaagaacaactata |
107 |
Q |
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| T |
952411 |
agaaaaagaatagttaggtaaacggatgtcctctgcgtttggggggtctcctacgaccatggcatcggccttcatcatgttcattttaagaacaacgata |
952510 |
T |
|
| Q |
108 |
attctgttaaaaacataaacgagatagatagatagttaataaacgcgtgtaatgtagaataaaaatgatagttgtgtaaaaatagaggaagtgatgcatt |
207 |
Q |
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| T |
952511 |
attctgttaaaaacataaacgagat----agatagttaataaaggcgtgtaatgtagaataaaaatgataattgtgtaaaaatagaggaagtgatgcatt |
952606 |
T |
|
| Q |
208 |
acttgtctccactgtccaaagttctgcaacaatactgcatcaaccttacaattgacccaacacggtacccttctcgaatgtatgttcttgagagcgatac |
307 |
Q |
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| T |
952607 |
acttgtctccactgtccaaagttctgcaacaatactgcatcaaccttacaattgacccaacacggtacccttctcgaaggtatgttcttgagagcgatac |
952706 |
T |
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| Q |
308 |
actcaacaaggcatagtgtgcattttgaccatcccataagagtaaatgaggtttgttacatagtccttcggttaccgggaaatttacaatatgtaaaatt |
407 |
Q |
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| T |
952707 |
actcaacaaggcatagtgtgcattttgaccatcccataagagtaaatgaggtttgttacatagtccttcggttatcgggaaatttacaatatgtaaaatt |
952806 |
T |
|
| Q |
408 |
tgcagaagcatataaggcttctctccttttagtgtgccttctttgtgaacgaagagtatgtcatggatagcattagaggtcaaattgacatctgagaaag |
507 |
Q |
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| T |
952807 |
tgcataagcatataaggcttctctccttttagtgtgccttctttgtgaacgaagagtatgtcatggatagcattagaggtcaaattgacatctgagaaag |
952906 |
T |
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| Q |
508 |
tctgaaatcaaataacaaataagaatcaggtaattaactatatactttcatacctc |
563 |
Q |
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| T |
952907 |
tctgaaatcaaaaaacaaataagaatcaagtaattaactatatactttcatacctc |
952962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 705 - 798
Target Start/End: Original strand, 953212 - 953305
Alignment:
| Q |
705 |
gaacattaccgatttatatttctcttgggaagtagtctccacatcaatcgcaagggacttcatcttttttagggtaagaggatccatgaaggaa |
798 |
Q |
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| T |
953212 |
gaacattaccgatttatatttctcttgggaagtagtctccacatcaatcgcaagggacttcatcttttttagggtaagaggatccatgaaggaa |
953305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 798 - 896
Target Start/End: Original strand, 953361 - 953456
Alignment:
| Q |
798 |
agcagaaaactgataatagggttttgaatggatttttgatattttatatccccacttttctgaagtttgttacaaaacccacgggcctctcttgaatgg |
896 |
Q |
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| T |
953361 |
agcagaaaactgataatagggttttgaatggattttcgatat---atatccccacttttctgaagtttgttacaaaacccacgggcctctcttgaatgg |
953456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 335
Target Start/End: Complemental strand, 2940604 - 2940462
Alignment:
| Q |
192 |
gaggaagtgatgcattacttgtctccactgtccaaagttctgcaacaatactgcatcaaccttacaattgacccaacacggtacccttctcgaatgtatg |
291 |
Q |
| |
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|||| ||||||||||| |||||||||||||| |||||| |||||| || |||||||| |||| |||||| | || ||||||||| ||| ||| | | | |
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| T |
2940604 |
gagggagtgatgcatttcttgtctccactgtacaaagtagtgcaaccgtattgcatcaatctta-aattgatctaatacggtacccctcttgaaagcaag |
2940506 |
T |
|
| Q |
292 |
ttcttgagagcgatacactcaacaaggcatagtgtgcattttga |
335 |
Q |
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| T |
2940505 |
ttcttgagaggtataaacccaatatggcatagagtgcattttga |
2940462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 433 - 469
Target Start/End: Original strand, 955889 - 955925
Alignment:
| Q |
433 |
cttttagtgtgccttctttgtgaacgaagagtatgtc |
469 |
Q |
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| T |
955889 |
cttttagtgtgccttctttgtgaacgaagagtatgtc |
955925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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