View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5540-Insertion-5 (Length: 1022)
Name: NF5540-Insertion-5
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5540-Insertion-5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 189 - 559
Target Start/End: Complemental strand, 5830809 - 5830432
Alignment:
| Q |
189 |
aagaggtgcaatctgagatgccgtcaccctcactatcacgtgttttataatttcctgaaggcccccaagaaatgtcagtgttgcctatgtttggtgatca |
288 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5830809 |
aagaggtgcaatctgagatgctgtcaccaccactatcacgtgttttataatttcctgaaggcccccaagaaatgtcagtgttgcctatgtttggtgatca |
5830710 |
T |
|
| Q |
289 |
tgtggcgattcatatatcgtacattttgacacaattgatctcgagacgcgggaacattttgataatgtaatttcgaatccaataaaaatatttggaatgt |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5830709 |
tgtggcgattcatatatcgtacattttgacacaattgatctcgatatgcgggaacattttgataatgtaatttcgaatccaataaaaatatttggaatgt |
5830610 |
T |
|
| Q |
389 |
gtgatggttatgtactctagaatgattttaattattcaatacaccgaacaagtaca-------actgctgcatacttctaatgatcacagggctgcattt |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5830609 |
gtgatggttatgtactctagaatgattttaattattcaatacaccgaacaagtacaactggcaactgctgcatacttctaatgatcacagggcagcattt |
5830510 |
T |
|
| Q |
482 |
ttcgctacattaatttggagtattttgaaacatataaaaaccaaattatggaatacttcaacagggcagaacaatttt |
559 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5830509 |
tttgctacattaatttggagtattttgaaacatataaaaaccaaatcatggaatacttcaacagggcagaacaatttt |
5830432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 5830998 - 5830851
Alignment:
| Q |
17 |
ttgctttctcaggtttatgtgttgtatgtagagtttataattgtgtttggttttcctttgtttcaataatggagagaattcctgatgtacatcgtattag |
116 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
5830998 |
ttgctttctgaggtttatgtc--gtatgtagggtttataattgtgtttgcttttcccttgtttcaataatggagagaattactgatgcacatcgtattag |
5830901 |
T |
|
| Q |
117 |
gcaaggcagagttacatcgactgcctttcttcgccaagagtggcaagcaa |
166 |
Q |
| |
|
||||||||||||||||||| |||||||| || |||||||| ||||||||| |
|
|
| T |
5830900 |
gcaaggcagagttacatcggctgcctttgtttgccaagagcggcaagcaa |
5830851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 617 - 706
Target Start/End: Complemental strand, 14088453 - 14088364
Alignment:
| Q |
617 |
aaggaagcattgtggatgagaggtcttcgagatgatttaggtattcaacaggaatgtgtgaaaatgaggtgtgatagtcaaagtgcgatt |
706 |
Q |
| |
|
||||||||||||||| |||||||||||| || |||||| ||| || || ||| |||||| ||| |||||||||||||||||||||| |
|
|
| T |
14088453 |
aaggaagcattgtggctgagaggtcttctaggtgatttgggtgttacgcaagaacgtgtgagtctgatgtgtgatagtcaaagtgcgatt |
14088364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 617 - 706
Target Start/End: Original strand, 33698242 - 33698331
Alignment:
| Q |
617 |
aaggaagcattgtggatgagaggtcttcgagatgatttaggtattcaacaggaatgtgtgaaaatgaggtgtgatagtcaaagtgcgatt |
706 |
Q |
| |
|
||||||||||||||| |||||||||||| || |||||| ||| || || ||| |||||| ||| |||||||||||||||||||||| |
|
|
| T |
33698242 |
aaggaagcattgtggctgagaggtcttctaggtgatttgggtgttacgcaagaacgtgtgagtctgatgtgtgatagtcaaagtgcgatt |
33698331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 617 - 706
Target Start/End: Complemental strand, 24877183 - 24877094
Alignment:
| Q |
617 |
aaggaagcattgtggatgagaggtcttcgagatgatttaggtattcaacaggaatgtgtgaaaatgaggtgtgatagtcaaagtgcgatt |
706 |
Q |
| |
|
||||||| ||||||| |||||||||||| || |||||| ||| || || ||| |||||| ||| |||||||||||||||||||||| |
|
|
| T |
24877183 |
aaggaagtattgtggctgagaggtcttctaggtgatttgggtgttacgcaagaacgtgtgagtctgatgtgtgatagtcaaagtgcgatt |
24877094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 893 - 922
Target Start/End: Original strand, 9955051 - 9955080
Alignment:
| Q |
893 |
ttcaaattatgaacgaggtggagaattgtg |
922 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9955051 |
ttcaaattatgaacgaggtggagaattgtg |
9955080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University