View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5540-Insertion-6 (Length: 1022)
Name: NF5540-Insertion-6
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5540-Insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 805; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 805; E-Value: 0
Query Start/End: Original strand, 8 - 1014
Target Start/End: Complemental strand, 25083125 - 25082127
Alignment:
| Q |
8 |
attagaacacttgagaagaaaaattaaatgatctaatccctttagatttttatttgcattcattgtgatagcactaatgatgcaattaacatagattttc |
107 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25083125 |
attagaacacttgagaagaaaaattatatgatctaatccctttagatttttatttgcattcattgtgatagcactaatgatgcaattaacatacattttc |
25083026 |
T |
|
| Q |
108 |
cggtgtaacaaagcgcaggaggtctgacctgtagctggtatttgacaagtcattcatggtttggttgatgtggcggacatttttgtgtcgttgactcgtt |
207 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25083025 |
cggtgtaacaaaacgcaggaggtctgatctgtagctggtatttgacaagtcattcatggtttggttgatgtggcggacatttt-gtgtcgttgactcgtt |
25082927 |
T |
|
| Q |
208 |
gttcttcttgctgcttcagacgttgttacaaccgtttgtacaagactttacattgatgttatggtggatatggtggtgttgaaatgaaaagctgttgagg |
307 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25082926 |
gttcttcttgctgcttgagacgttgttacaaccgtttgtacaagactttacattgatgttatggtggatatggtggtgttgaaatgaaaagctgtggagg |
25082827 |
T |
|
| Q |
308 |
acatcgaacagcctgatatgtctgtacagtcggctaggggctgttcggtcacatggctctaggcgcgcgacaaaacctagtacggtacagaagctagaat |
407 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25082826 |
acatcgaacagcctgatatgtctgtactgtcggctaggggctgttcggtcacatggctctaggcgcgcgacaaaacctagtacggtacagaagctagaat |
25082727 |
T |
|
| Q |
408 |
agtagggagcacacggtggtcgaggccaacaacaatttacattaaaagtaatgtggacacggcgatttctaaaaagcaaggacgctttggagcgaaaatg |
507 |
Q |
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| T |
25082726 |
agtagggagcacaaggtggtcgaagccaacaacaatttacattaaaagtaatgtggacgcggtgatttctaaaaagcaaggacgctttggagcgaaaatg |
25082627 |
T |
|
| Q |
508 |
tgtttgtgaaatgacaatggagatcttattcgtgcgaaaacttcatggtatcacgggcttgcatcaccacatgagacagaagtttggggcttnnnnnnnt |
607 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25082626 |
tgtttgagaaatgacaatggagattttattcgtgcgaaaacttcatggtatcacgggcttgcatcaccacatgagacagaagtttggggcttaaaaaaat |
25082527 |
T |
|
| Q |
608 |
tacaatgctttcagttattaaattcatatttaagcttttgtaatagtatgcaataaagactactaaaataacacaatgatggccgagttggataacatca |
707 |
Q |
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| T |
25082526 |
tacaatgctttcagttattaaattcatatttaagcttttgtaatagtatgcaataaagactactaaaataacacaatgatggccgagttggataacatca |
25082427 |
T |
|
| Q |
708 |
gcttgtaactcgagtggaggcattaatgtggtgg-acatggttcaggattcattgggtttggcttgaggatgcaatttctggcgtgcccactccaagttg |
806 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25082426 |
gcttgtaactcgagtggaggcattaatgtggtggaacatggttcaggattcattgggtttggcttgaggatgcaatttctggcgtgcccactccaagttg |
25082327 |
T |
|
| Q |
807 |
agagttgattaacagagcctgagcgaaagccccaatttcattgggttctagacaggaggggcaccgcgtgaagcctggcttaatagagttattagactat |
906 |
Q |
| |
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||||||||||||| ||||||||||||||| |||||||||||| ||||||||||| || | |||||||||| || ||||||||||||||||||||||||| |
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| T |
25082326 |
agagttgattaacggagcctgagcgaaag-cccaatttcatt-ggttctagaca-gaagagcaccgcgtg-aggctggcttaatagagttattagacta- |
25082232 |
T |
|
| Q |
907 |
ttatgtgaatatctctatatttacgaatatcattattggtaatt-agtgtaaattttcgggcctccccaacaatgaagggattccagcccgtcaccactt |
1005 |
Q |
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| T |
25082231 |
ttatgtgaatatctctatatttacgaatatcattattgtaaattaagtgtaaatttttgg--ct-cccaacaatggagggattacaggccgtca-cactt |
25082136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 711 - 835
Target Start/End: Original strand, 46430368 - 46430493
Alignment:
| Q |
711 |
tgtaactcgagtggaggcattaatgtggtgga-catggttcaggattcattgggtttggcttgaggatgcaatttctggcgtgcccactccaagttgaga |
809 |
Q |
| |
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|||||| | ||||| ||||||||||||||||| |||||||||||| || | |||| ||||||| |||||||| |||| |||||||||||||||| || |
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| T |
46430368 |
tgtaacccaagtgggggcattaatgtggtggaacatggttcaggaaacactcggttgggcttgaaactgcaatttgtggcctgcccactccaagttggga |
46430467 |
T |
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| Q |
810 |
gttgattaacagagcctgagcgaaag |
835 |
Q |
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| T |
46430468 |
gttgattaatggggcctgagcgaaag |
46430493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 689 - 742
Target Start/End: Original strand, 37147469 - 37147522
Alignment:
| Q |
689 |
gccgagttggataacatcagcttgtaactcgagtggaggcattaatgtggtgga |
742 |
Q |
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||||||||||||||||||| |||||||| | ||||| |||| ||||||||||| |
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| T |
37147469 |
gccgagttggataacatcaacttgtaacccaagtgggggcaacaatgtggtgga |
37147522 |
T |
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