View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5540-Insertion-7 (Length: 747)
Name: NF5540-Insertion-7
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5540-Insertion-7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 3e-84; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 440 - 739
Target Start/End: Original strand, 49862545 - 49862872
Alignment:
| Q |
440 |
ataaatgaatagttaaatcctttttgcaaatttggagttttgctcttca---------gataagttcatagaagatgaactcaagatataagattgttca |
530 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| || |||| | ||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
49862545 |
ataaatgaatagttaaatcgtttttgcaaatttggagttctgttctttacctacattagataagt-catagaagatgaactcaagatataagattgttta |
49862643 |
T |
|
| Q |
531 |
tgtgaatctcttaaaatacattactttgagtcaattcattcaatttttattcaaatgatcaattattaaataaactctacaaatattttnnnnnnnttaa |
630 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49862644 |
tgtgaatctcttaaaatacattactttgaggcaattcattcaatttttattcaaatgatcaattattaaataaactctacaaatattttataaaaattaa |
49862743 |
T |
|
| Q |
631 |
acgatattgtatttcacatt--------------------tttgtttcacataacttgtttttcactacgacaaactccaatggtgagcaatttgtcacg |
710 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |
|
|
| T |
49862744 |
acgatattgtatttcacatttctgataatgagttccacagtttatttcacataacttgtttttcactacgacaaactccaacagcgagcaatttgtcatg |
49862843 |
T |
|
| Q |
711 |
ctcatagtgtactggggacatatgtgaca |
739 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
49862844 |
ctcatagtgtactggggacatatgtgaca |
49862872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 49862237 - 49862370
Alignment:
| Q |
8 |
gtttcggtcaccaatgagtcgtgttttgtcgttcacgagaatccttagcagagagaggaaaccaagcatttctccgtcgttggattgtgccgcagatgca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49862237 |
gtttcggtcaccaatgagtcgtgttttgtcgttcacgagaatccttagcagagagaggaaaccaagcatttctccgtcgttggattg---------tgca |
49862327 |
T |
|
| Q |
108 |
gaatgaggtgaaagggaggagactcagtgagttgattgatgac |
150 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49862328 |
gaacgaggtgaaagggaggagactcggtgagttgattgatgac |
49862370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 49862371 - 49862470
Alignment:
| Q |
186 |
ttaagtgcatgaatgtcgcaacacaaattataaagtgaacggcgagggatgaccatcatcatttgccatgtcgctcaaacatcactact-tctcgtcata |
284 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || || ||||| |||||||||| ||||||||||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
49862371 |
ttaagtgcatgaatgttgcaacacaaattacaatgtcaacggggagggatgacgatcatcatttgccat---gctcaaacatcgctactgtctcgtcata |
49862467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 49862465 - 49862543
Alignment:
| Q |
308 |
ataattgaaccgacgacggtagcaatattcgagtgacatgacatggcaagcagataagccaaagacgat-gtcatttctcgatg |
390 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||||||||| |||| ||||||||||||||| ||||||||| |||| |
|
|
| T |
49862465 |
ataattgaaccgaggaaggtagcaatattcgag-----tgacatggcatgcagttaagccaaagacgatggtcatttcttgatg |
49862543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University