View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5540-Insertion-8 (Length: 665)
Name: NF5540-Insertion-8
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5540-Insertion-8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 8 - 665
Target Start/End: Original strand, 42801865 - 42802522
Alignment:
| Q |
8 |
tcatcatcgctggtgttaacaagaactcggtgtggtggagatggcgtcatattcttcctcaatttaatcaaaggtttcgggtttgaataatagtgtgaat |
107 |
Q |
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| T |
42801865 |
tcatcatcgttggtgttaacaagaactcggtgtggtggagatggcgtcatattcttcctcaatttaatcaaagttttcggatttgaataatagtgtgaat |
42801964 |
T |
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| Q |
108 |
gtggaactcataggttgcgacactagatctataataaagattaatgctatttacggcgaaagttgggcttacgaaatcatcctgatacacatggattgtt |
207 |
Q |
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| T |
42801965 |
gtggaactcataggttgcgacactagatctataataaagattaatgctatttacggcgaacgttgggcttacgaaatcatcctgatacacatggattgtt |
42802064 |
T |
|
| Q |
208 |
ttcattgcatgattgataaatgacctccatgttttcagcccaccacccatgtattccgctcaaacctggattttgattggccaaattttatatcgtgatg |
307 |
Q |
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| T |
42802065 |
ttcattgcatgattgataaatgatctccatgttttcagcccaccacccatgtattccgctcaaacctgaattttgattggccaaattttatatcgtgatg |
42802164 |
T |
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| Q |
308 |
aattcttgnnnnnnnntgtcgctgtaaatagcatatctctttaattacatcaaaattaatgattaagcaaaaaattcatgttaacaagtttctttggcaa |
407 |
Q |
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| T |
42802165 |
aattcttgaaaaaaagtgtcgctgtaaatagcatatctctttaattacatcaaaattaatgattaagcaaaaaattcatgttaacaagtttctttggcaa |
42802264 |
T |
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| Q |
408 |
tctcattaatttaagttaaacctcaatgatattttgaaaagaaaaatttgacatgttgcaaaatcataatcagttattattgtcaacaggactaaatttg |
507 |
Q |
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| T |
42802265 |
tctcattaatttaagttaaacctcaatgatactttgaaaagaaaaatttgacatgttgcaaaatcataatcagttattattgtcaacaggactaaatttg |
42802364 |
T |
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| Q |
508 |
agttacaagctaatcaatggttatacttttgaaactatgtgaaaaatgaacactnnnnnnntcattgccaatttttctaactagcaaatgcatctgtatc |
607 |
Q |
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| T |
42802365 |
agttacaagctaatcaatggttatacttttgaaactatgtcaaaaatgaacactaaaaaaatcattgccaatttttctaactagcaaatgcatctgtatc |
42802464 |
T |
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| Q |
608 |
aaaaataaaacagccccaactatgagccaaacatcgaacataaaagacctatactctt |
665 |
Q |
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| T |
42802465 |
aaaaataaaacagccccaactataagccaaacatcgaacataaaaaacctatactctt |
42802522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 220 - 315
Target Start/End: Original strand, 9673069 - 9673164
Alignment:
| Q |
220 |
ttgataaatgacctccatgttttcagcccaccacccatgtattccgctcaaacctggattttgattggccaaattttatatcgtgatgaattcttg |
315 |
Q |
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| T |
9673069 |
ttgataaatgacctccatgtttttagcccaccacccatgtatttcgctaaaacctgaattttgattggccaatttttgtatcggaatgatttcttg |
9673164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 9672811 - 9672888
Alignment:
| Q |
150 |
aatgctatttacggcgaaagttgggcttacgaaatcatcctgatacacatggattgttttcattgcatgattgataaa |
227 |
Q |
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| T |
9672811 |
aatgctatttacaactaatggtgggcttgcgaaatcatcctgatacatatggattgttttcattgcctgattgataaa |
9672888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 296
Target Start/End: Original strand, 43223260 - 43223378
Alignment:
| Q |
179 |
cgaaatcatcctgatacacatggattgttttcattgcatgattgataaatgacctccatgttttcag-cccaccacccatgtattccgctcaaacctgga |
277 |
Q |
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| T |
43223260 |
cgaaatcatcctaacacatgtggatagttttcattgcatcattgatagctgttctccatgttttcagccccatcatccatgtattcagctaaaaactgaa |
43223359 |
T |
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| Q |
278 |
ttttgattggccaaatttt |
296 |
Q |
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|||| ||||||||| |||| |
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| T |
43223360 |
ttttaattggccaattttt |
43223378 |
T |
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