View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5540-Insertion-9 (Length: 616)
Name: NF5540-Insertion-9
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5540-Insertion-9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 171; Significance: 2e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 327 - 584
Target Start/End: Original strand, 126399 - 126657
Alignment:
| Q |
327 |
acaatatatgctgttatttactttttgaagaaatatatgctgttaacnnnnnnngcaaaatatatcctattaacttaaaacctgagaatttgtaaaaaag |
426 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
126399 |
acaatatatgctgttatttactttttgacgaaatatatgctgttaactttttttccaaaatatatcctattaacttaaaacctgagaatttgtaaaaaag |
126498 |
T |
|
| Q |
427 |
cattaaataaaatccgataagatatggtaacacttgagacaaaattactacnnnnnnnnnnnnn-ttgagagaacaaattacattagatttaatagactt |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
126499 |
cattaaataaaatccgataagatatggtaacatttaagacaaaattactataaaaaaataaaaaattgagagaacaaattacattagatttaatagactt |
126598 |
T |
|
| Q |
526 |
atagaatattcaactacctattataaaagactaattaagttggggtttaacaactttac |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
126599 |
atagaatattcaactacctattataaaagactaattaagttggggtttaacaactttac |
126657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 126100 - 126235
Alignment:
| Q |
27 |
acactaaatgatatcaactgttactatgagatcagacggttaaannnnnnnatcgctattttgagatcgaaaattgcatgacacatatacttcatcaaat |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
126100 |
acactaaatgatatcaactgttactatgagatcagacggttaaaattttttatcgttattttgagatcgaaaactgcatgacacatatacttcatcaaat |
126199 |
T |
|
| Q |
127 |
ccaaaccggcttgtcttccattaattcatgtgtgtg |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
126200 |
ccaaaccggcttgtcttccattaattcatgtgtgtg |
126235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 126295 - 126338
Alignment:
| Q |
219 |
gacaagatatagatttaaacttttaagaaaatataaacaggacc |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
126295 |
gacaagatatagatttaaacttttaagaaaatataaacaggacc |
126338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University