View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5540_high_2 (Length: 505)
Name: NF5540_high_2
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5540_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 20 - 494
Target Start/End: Complemental strand, 952415 - 951945
Alignment:
| Q |
20 |
tttctcgtcctccgattcctctgaaacgacgactttctccgattctaggtggctatcaattggaatatggtgaaagcagcaacacaagaagtgatcatca |
119 |
Q |
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| T |
952415 |
tttctcgtcctcccattcctctgaaacgacgactttctccgattctaggtggctatcaattggaatatggtgaaagcagcaacacaagaagtgatgatca |
952316 |
T |
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| Q |
120 |
atattctttcnnnnnnntgaaaataaggaggtgcaagtcaatatgaaaattaaataaaagttgttttatgttttcagtttatatatcaannnnnnnaacc |
219 |
Q |
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| T |
952315 |
atattctttcaaaaaaatgaaaataaggaggtgcaggtcaatatgaaaattaaa----agttgttttatgttttcagtttatatatcaatttttttaagc |
952220 |
T |
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| Q |
220 |
tttatctctacatatttgtttccttgacttcctaaaatttctttttaagatttatgtatcaagatttgtttcgattaaaattgtttattactgctctagc |
319 |
Q |
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| T |
952219 |
tttatctctacatatttgtttccttgacttcctaaaatttctttttaagatttatgtatcaagatttgtttcgattaaaattgtttattactgctctagc |
952120 |
T |
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| Q |
320 |
tttattgtgttcgtgattctcgtatgtcatttgccacannnnnnncaatgtagtttaatttggattgcaatggtttgtctgttttccccgcagttgaacc |
419 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
952119 |
tttattgtgttcgtgattctcgtatgccatttgccacatttttttcaatgtagtttaatttggattgcaatggtttgtctgttttccccgcagttgaacc |
952020 |
T |
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| Q |
420 |
ttgtacgaccaaaaataaaatctcaaaggatagattgagtgttggacaaatcatgtacaatttagcatgatgatg |
494 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
952019 |
ttgtacgaccaataataaaatctcaaaggatagattgagtgttggacaaatcatgtacaatttagcatgatgatg |
951945 |
T |
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