View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5540_high_5 (Length: 407)
Name: NF5540_high_5
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5540_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 92 - 389
Target Start/End: Complemental strand, 5831304 - 5831006
Alignment:
| Q |
92 |
ttgtataacaaatcgtattaatatacggtgtggacaactttttggctgatcattttacatttccctttaacaaattgattaaaaaa-tgatctaaaaccc |
190 |
Q |
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| T |
5831304 |
ttgtataacaaaccgtattaatatacggtgtggacaactttttggctgttcattttacatttccctttaacaaattgattaaaaaaatgatctaaaaccc |
5831205 |
T |
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| Q |
191 |
ttaaaatatacttgattttccatctaaaccaccttacaaacttcgcatttcatcattttggaagccataatcaagaggtaagttatcaattctcctcatt |
290 |
Q |
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| T |
5831204 |
ttaaaatatacttgattttccatctaaaccaccttacaaacttcgcatttcaccattttggaagccataatcaagaggtaagttatcaattctcctcatt |
5831105 |
T |
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| Q |
291 |
ttcgtttttagttcacattttcctctgtttatgtccaacttgtacaattcgaatgttggttgtatctatattggccaatccaggcactacgcatgttat |
389 |
Q |
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| T |
5831104 |
ttcgtttttagttcacattttcctctgtttatgtccaacttgtacaattcgaatgttggttgtatctatattggccaatccagacactatgcatgttat |
5831006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 5831439 - 5831393
Alignment:
| Q |
48 |
gatgtgattaaattggttttgttttaattttgagtaatgttatattg |
94 |
Q |
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| T |
5831439 |
gatgtgattaaattggttttgttttaattttgagtaatgttatattg |
5831393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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