View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5540_high_8 (Length: 354)
Name: NF5540_high_8
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5540_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 42 - 338
Target Start/End: Original strand, 493525 - 493817
Alignment:
| Q |
42 |
ctactagacatacaaaacaaaaggagcatgcatatatacctgagaaataactccaagaacccctaaagaaactcttgctgcattaagatcttggtgagat |
141 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
493525 |
ctactagacatacaaaacaaaaggaacatgcata----cctgagaaataactccaagaacccctaaagaaactctggctgcattaagatcttgatgagat |
493620 |
T |
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| Q |
142 |
tcattaagatttcgaaccttagcatatccatcttcacatcctgcagggctaactattctaatatgtgttacatactcatgaacagcacttcctttacccc |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
493621 |
tcattaagatttcgaaccttagcatatccatcttcacatcctgcagggctaactattctaatatgtgttacatactcatgaacagcacttcctttacccc |
493720 |
T |
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| Q |
242 |
acaatgtacttccatgtgcaccggtgctaattaggccaccaatggttaaaccccaccaatatggtgtatttggcagagccatttcaaaccttgcagc |
338 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
493721 |
acaatgtacttccatgtgcaccagtgctaattaggccaccaatggttaaaccccaccaatatggtgtatttggcagagccatttcaaaccttgcagc |
493817 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 310
Target Start/End: Complemental strand, 9063943 - 9063844
Alignment:
| Q |
211 |
acatactcatgaacagcacttcctttaccccacaatgtacttccatgtgcaccggtgctaattaggccaccaatggttaaaccccaccaatatggtgtat |
310 |
Q |
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||||| |||||||| ||||||||||| ||| ||||||| |||||||| ||||| || | || | ||||| || |||||||| ||||||||||||||| |
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| T |
9063943 |
acatagtcatgaaccgcacttcctttccccgacaatgtgcttccatgagcaccagttccgatcattccacctattgttaaaccataccaatatggtgtat |
9063844 |
T |
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