View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5540_low_1 (Length: 707)
Name: NF5540_low_1
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5540_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 556; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 72 - 694
Target Start/End: Original strand, 3806981 - 3807601
Alignment:
| Q |
72 |
aataaaaacacgacttgaataaatgctatatttgtttattaataaatatgatttaaatttgcttttgttccaaaatcatttgattttggtgtagaccaat |
171 |
Q |
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| T |
3806981 |
aataaaaacacgacttggataaatgctatatttgtttattaataaatatgatttaaatttgcttttgttccaaaatcatttgattttggtttagaccaat |
3807080 |
T |
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| Q |
172 |
atagataacacaagttctttggagacaaagataaggagtgccaccaaagaagctattgaagaaatagaaagctgtggaacagtgtgtggctgcaccagaa |
271 |
Q |
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| T |
3807081 |
atagataacacaagttctttggagactaagataaggagtgccaccaaagaagctattgaagaaatagaaagctgtggaacagtgtgtggctgcaccagaa |
3807180 |
T |
|
| Q |
272 |
agaagggtgctatcacctcttgccgagactgcttaatgagggaagtttttaggaggcttcacaaaactggtttcaatattgctatttgtaaaacaaaatg |
371 |
Q |
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| T |
3807181 |
agaagattgctatcacctcttgccgagactgcttaatgagggaagtttttacgaggcttcacaaaactggtttcaatattgctatttgtaaaacaaaatg |
3807280 |
T |
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| Q |
372 |
gagaacttcatcagatattccatcaggtaaatgtcatttattgctaacaaatatagttatgaaaagcaatattattagaatttacgaccttcggatataa |
471 |
Q |
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| T |
3807281 |
gagaacttcatcagatattccatcaggtatatgtgatttattgctaacaaatatagttatgaaaagcaatattattagaatttacgaccttcagatataa |
3807380 |
T |
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| Q |
472 |
gaaccggaaaatgatacaatcgtagagtctttgcattgaacgtatttatctatttaatgtgaaatttctaatatacccccactattgtcttcaaaatgtc |
571 |
Q |
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| T |
3807381 |
gaaccggaaaatgatacaat--aatagtctttgcattgaacgtatttatctatttaatgttaaattcctaatatacccccactattgtcttcaaaatgtc |
3807478 |
T |
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| Q |
572 |
atgtttaatgtgtcctcctctaatcatttgctcctcaagatgtctccataaaaacaaaatatattagagaaaattagtaaagtacattaaagttttctct |
671 |
Q |
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| T |
3807479 |
atgtttaatgtgtcctcctctaatcatttgctcctcaagatgtctccataaaaacaaaatatattagagaaaattagtaaagtacattaaagttttctct |
3807578 |
T |
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| Q |
672 |
acatttctttcctgatctttttg |
694 |
Q |
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| T |
3807579 |
aaatttctttcctgatctttttg |
3807601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 149 - 400
Target Start/End: Original strand, 3775101 - 3775355
Alignment:
| Q |
149 |
atttgattttggtgtagaccaatatagataacacaagttctttggagacaaagataaggagtgccaccaaagaagctattgaagaaatagaaagctgtgg |
248 |
Q |
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| T |
3775101 |
atttaattttggtgcagaccaatatatacagaacaagttctttggagacaaagataaggagtgccactaaagaagctattcaagaaataaaaagctgtga |
3775200 |
T |
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| Q |
249 |
aacagtgtgtggctgcaccagaaa---gaagggtgctatcacctcttgccgagactgcttaatgagggaagtttttaggaggcttcacaaaactggtttc |
345 |
Q |
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| T |
3775201 |
agcagtgtgtggctgcaacagaaagatgatgggtgccatcaccacctgcagaaactgcttaatgagggaagtttctatgaggcttcagaaagctggtttc |
3775300 |
T |
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| Q |
346 |
aatattgctatttgtaaaacaaaatggagaacttcatcagatattccatcaggta |
400 |
Q |
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| T |
3775301 |
aatagtgctatttgcaaaacaaaatggagaacttcatcagatattccgtcaggta |
3775355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 3806915 - 3806967
Alignment:
| Q |
27 |
tgtgtgtgttatatttttaaattaatttcaatacttatcagcaaaaataaaaa |
79 |
Q |
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| T |
3806915 |
tgtgtgtgtgttatttttaaattaatttcaatacttatcagcaaaaataaaaa |
3806967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 3775024 - 3775072
Alignment:
| Q |
112 |
aataaatatgatttaaatttgcttttgttccaaaatcatttgattttgg |
160 |
Q |
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| T |
3775024 |
aataaatatgatttaaattttcttttgttccaaaagcattagattttgg |
3775072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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