View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5540_low_3 (Length: 430)
Name: NF5540_low_3
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5540_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 69 - 414
Target Start/End: Complemental strand, 21159604 - 21159271
Alignment:
| Q |
69 |
aaagcttaagagcaacaacaaacacattaaagcaataaacgtaaagtggtggttgaatgatgaaattcctaaacaaaccttaaggtactatcactctcca |
168 |
Q |
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| T |
21159604 |
aaagcttaagagcaacaacaaacacattaaagcaataaacgtaaagtggtggttgaatgatgaaattcctaaacaaaccttaaggtactatcactctcca |
21159505 |
T |
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| Q |
169 |
tatctctgtaacaaggataggttgtagggaccatatcacacccttcatgggagacatatatgtgtctaccttctttggcttctttcacttaacgtgtgag |
268 |
Q |
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| T |
21159504 |
tatctctgtaacaaggataggttgtagggaccatatcacacccttcatgggagacatatatgtgtctgccttctttggcttctttcacttaacgtgtgag |
21159405 |
T |
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| Q |
269 |
ggcaaatgcatatgcaaatgctaatatatttgatagattctattatgctttattttcttgtgcctttacctattctaatttatttccaaaaagcaaaact |
368 |
Q |
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| T |
21159404 |
g------------gcaattgctaatatatttcatagattttattatgctttatttttgtgtgcctttacctattctaatttatttccaaaaagcaaaact |
21159317 |
T |
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| Q |
369 |
ataatagtacttctatgcccactctccttttatgcgtttgcacatt |
414 |
Q |
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| T |
21159316 |
ataatagtacttccattcccactctccttttaagcgtttgcacatt |
21159271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 21159771 - 21159705
Alignment:
| Q |
5 |
gtattgtgctagaataattttcttaatagattttttggcttattaaaaaatgatcctttcgtccaaa |
71 |
Q |
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| T |
21159771 |
gtattgtgctagaataattttcttaatagattttttggcttattaaaaaaagattctttcgtccaaa |
21159705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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