View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5540_low_4 (Length: 422)
Name: NF5540_low_4
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5540_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 49861838 - 49862241
Alignment:
| Q |
1 |
agcggtcgaatgcgcggtttgtttatcggagtttgaagatggagaaacaggtcgggttttacccaaatgtaatcatagttttcatattgattgtattgat |
100 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49861838 |
agcggtggaatgcgctgtttgtttatcggagtttgaagatggagaaacaggtcgggttttacccaaatgtaatcatagttttcatattgattgtattgat |
49861937 |
T |
|
| Q |
101 |
atgtggtttcagtctcattctacatgtccgctttgtagagcgcccgtggaggctgcgccggttcaagcgaccagacaagaagtgacaattgatatgtgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49861938 |
atgtggtttcagtctcattctacatgtccgctttgtagagcgcccgtggaggctgcgccggttcaagcgaccagacaagaagtgacaattgatatgtgtg |
49862037 |
T |
|
| Q |
201 |
aaccggaattggttttgggttcgagttctggtgatgaaatgaaccagtctgtatcggaattttcttcttcttgttcttcctcatgttctgatgagaagca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49862038 |
aaccggaattggttttgggttcgagttctggtgaagaaatgaaccggtctgtatcggaattttcttcttcttgttcttcctcatgttctgatgagaagca |
49862137 |
T |
|
| Q |
301 |
atcttcattggttgacattaccgttgagattccgagaaggagtgaatccgattgcaagagttttgctgtgggagagtcgagttgtgattcaccatcatcg |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49862138 |
atcttcatcggttgacattaccgttgagattccgagaaggagtgaatccgattgcaagagttttgctgtgggagagtcgagttgtgattcaccatcatcg |
49862237 |
T |
|
| Q |
401 |
tttc |
404 |
Q |
| |
|
|||| |
|
|
| T |
49862238 |
tttc |
49862241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 13998998 - 13998859
Alignment:
| Q |
8 |
gaatgcgcggtttgtttatcggagtttgaagatggagaaacaggtcgggttttacccaaatgtaatcatagttttcatattgattgtattgatatgtggt |
107 |
Q |
| |
|
||||| || |||||||| ||||| |||||| || ||||| |||||||||||||||||||| || ||||||||||||| ||| |||||||||||||||| |
|
|
| T |
13998998 |
gaatgtgctgtttgtttgtcggaatttgaatccggtgaaacgggtcgggttttacccaaatgcaaacatagttttcatactgagtgtattgatatgtggt |
13998899 |
T |
|
| Q |
108 |
ttcagtctcattctacatgtccgctttgtagagcgcccgt |
147 |
Q |
| |
|
|||| |||||| || ||||| |||||| | |||||||| |
|
|
| T |
13998898 |
ttcattctcatgacacgtgtcctctttgtcgggcgcccgt |
13998859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 8434469 - 8434388
Alignment:
| Q |
57 |
ttttacccaaatgtaatcatagttttcatattgattgtattgatatgtggtttcagtctcattctacatgtccgctttgtag |
138 |
Q |
| |
|
||||||| ||||| |||||| | |||||| | ||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
8434469 |
ttttaccaaaatgcaatcatgggtttcatttagattgtattgatatgtggtttcaatctcattctacttgtcctctttgtag |
8434388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University