View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5540_low_6 (Length: 399)
Name: NF5540_low_6
Description: NF5540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5540_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 22 - 386
Target Start/End: Complemental strand, 3247633 - 3247269
Alignment:
| Q |
22 |
atggaaatgcagcatacaacaacaactaaatagatactacaatcaataaaaacacctctaattgcttggtatacaaccaaacctctctccaaaagtttca |
121 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3247633 |
atggaaatgcagcatacaacaacaactaaataaatactacaatcaataaaaacacctttaattgcttggtatacaaccaaacctctctccaaaagtttca |
3247534 |
T |
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| Q |
122 |
ctgcatcattccaactgcgtccatcttcagcagcttcaaccatttctcctttattttcttccaaaactcgagccttttcgctgtaaatgcgagcaatgac |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3247533 |
ctgcatcattccaactgcgtccatcttcagcagcttcaaccatttctcctttattttcttccaaaactcgagccttttcgctgtatatgcgagcaatgac |
3247434 |
T |
|
| Q |
222 |
aatcgtgacatcagttaccaagacaatgtaaagaggccttgaagccaaaatactctttgaggagattaagtaatagaaaacaaccagcaatgctattatc |
321 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3247433 |
aatcgtgacatcggttaccaagacaatgtaaagaggccttgaagccaaaatactctttgaggagattaagtaatagaaaacaaccagcaatgctattatc |
3247334 |
T |
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| Q |
322 |
agtgaacttagtgcacgtgtgttttcggaagttaaaatgcagaagttcagctctcttgatgagaa |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3247333 |
agtgaacttagtgcacgtgtgttttcggaagttaaaatgcagaagttcagctctcttgatgagaa |
3247269 |
T |
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