View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541-Insertion-1 (Length: 1142)
Name: NF5541-Insertion-1
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 212 - 744
Target Start/End: Complemental strand, 7426430 - 7425883
Alignment:
| Q |
212 |
agaggacgtagaacctacttaataagaataaaactatacaattaactcttcaaaaagaattacttttttaacatgtgtccttgataacactagttagcat |
311 |
Q |
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| T |
7426430 |
agaggacgtagaacctacttaataagaataaaactatacaattaactcttcaaaaagaattacttccttaacatgtgtccttgataacaatagttagtat |
7426331 |
T |
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| Q |
312 |
cttgaagaaaaaataacctgaaaatcaactctaataataatttttcaatcactctaacttcattgaaagtaattctattgaaatcatcgtaggactcaaa |
411 |
Q |
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| T |
7426330 |
cttcaagaaataataacctgcaaatcaactctaataataatttttcaatcattctaacttcattgaaagtaattctattgaaatcatcgtaggactcaaa |
7426231 |
T |
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| Q |
412 |
aatgaagattt---aatcctttcaactctactagtacattccttcnnnnnnn---ctctactatgtcccctatcatatttcaccagtagatagtagatac |
505 |
Q |
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| T |
7426230 |
aatgaagattttttaatcctttcaactctactagtacattccttcaaaaaaaaaactctactatgtcccctatcatatttcaccagtagatagtagatac |
7426131 |
T |
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| Q |
506 |
ttctaatcgtcaatcgtggtaatgtgtgatttagtgattctt---actcacagttttattccattattcttgaaaagttagaaacaaattaattgataat |
602 |
Q |
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| T |
7426130 |
ttctaatcgtcactcgcggtaatgtgtgatttagtgattcttcttactcacagttttattccattattcttgaaaagttaaaaacaaataaattgataat |
7426031 |
T |
|
| Q |
603 |
gatggccacttaaataagggaccagcccaaaccgaccttcgaattggtctacca-ttcaatcatgatatgcattcagcaactgaggaaaaca-----cca |
696 |
Q |
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| T |
7426030 |
gatggccacttaaataagggaccagcccaaaccgatcttcgaattggtctaccatttcaatcatgatatgcattcagcaactgaggaaaacaccactcca |
7425931 |
T |
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| Q |
697 |
ctagactagtaaaaagatatgcaacatcacacattttcaattttgacc |
744 |
Q |
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| T |
7425930 |
ctagactagtaaaaagatatgcaacatcacacattttcaattttgacc |
7425883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 7426652 - 7426467
Alignment:
| Q |
8 |
taagtgagaagacatgtatatatattatctttgatttagggtgaagatgtagattttgaactcagagttcaatatgaagattcttgta---------caa |
98 |
Q |
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| T |
7426652 |
taagtgagaagacatgtatatatattatctttgatttagggtgaagatgtagattttgaactcagagttcaatatgaagattcttgtaaaaattgtacaa |
7426553 |
T |
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| Q |
99 |
aagttgcttctgttttggatgtgtttttgtttgtgtatagatttcccaacacatgtaagagtttattcaaaattcatagcgtcaaa |
184 |
Q |
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| T |
7426552 |
aagttgcttctgttttggatgtgtttttgtttgtgtatagatttcccaacacatgtaagagtttattcaaaattcatagcgtcaaa |
7426467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 808 - 983
Target Start/End: Complemental strand, 7425872 - 7425701
Alignment:
| Q |
808 |
caacacaaatacttgtgaagatagactaaccgatgccaacatttttgttaatagtttag-ttggttagatcaattacttagttg-ttaagaaaatgtttc |
905 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
7425872 |
caacacaaatacttgtgaagatagactaaccgatgctaacatttttgttaatagtttagtttggttagatcaattacttagttgtttaagaaaatgtttc |
7425773 |
T |
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| Q |
906 |
ttcagagacatggttgatttaccttc-tatcgttttcg-tactcttatttcgatgagtt---gttatgtctcctctcctcacc |
983 |
Q |
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| T |
7425772 |
tt-----------ttgatttaccttcttatcgttttcgttactcttatttcgatgagtttggtttatgtctcctctcctcacc |
7425701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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