View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541-Insertion-13 (Length: 78)
Name: NF5541-Insertion-13
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541-Insertion-13 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 67; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-30
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 36373516 - 36373446
Alignment:
| Q |
8 |
cttccacaaaagaaacattcaaaatcgccatatctcgtttcatattaggtgcacctactaatattgctccg |
78 |
Q |
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| T |
36373516 |
cttccacaaaagaaacattcaaaatcgccatatctcgtttcatattaggtgcacctactaagattgctccg |
36373446 |
T |
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Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-21
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 36387475 - 36387405
Alignment:
| Q |
8 |
cttccacaaaagaaacattcaaaatcgccatatctcgtttcatattaggtgcacctactaatattgctccg |
78 |
Q |
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| T |
36387475 |
cttccaaaaaagaaacattcaaaatcgccatatctcgtttcatatcaggtgcacctattaaggttgctccg |
36387405 |
T |
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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 36425645 - 36425601
Alignment:
| Q |
34 |
gccatatctcgtttcatattaggtgcacctactaatattgctccg |
78 |
Q |
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| T |
36425645 |
gccatatctcgtttcatattaggtagacctactaatatttctccg |
36425601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 36404191 - 36404136
Alignment:
| Q |
8 |
cttccacaaaagaaacattcaaaatcgccatatctcgtttcatattaggtgcacct |
63 |
Q |
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|||||||||||||||| || ||| | ||||||||||||||||||||||| ||||| |
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| T |
36404191 |
cttccacaaaagaaacgttaaaagtttccatatctcgtttcatattaggtacacct |
36404136 |
T |
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