View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541-Insertion-5 (Length: 705)
Name: NF5541-Insertion-5
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541-Insertion-5 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 574; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 7 - 705
Target Start/End: Complemental strand, 42394018 - 42393323
Alignment:
| Q |
7 |
atggtgaaggatgtagaaggaaaggaaagtgaaagtaaggannnnnnnnnnnnnnngttgaatttgaaggaggaaggtgattccaagacaccattcacaa |
106 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42394018 |
atggtgaaggatgtagaaggaaaggagagtgaaagtaaggattttttgcagtttttgttgaatttgaaggaggaaggtgattccaagacaccattcacaa |
42393919 |
T |
|
| Q |
107 |
gcacccacgtgaaggctcttctcctggtatgctacctttgttacacatttatgttttgcgtcttctcacttcnnnnnnnngcggtatatggtttgtttaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
42393918 |
gcacccacgtgaaggctcttctcctggtatgctacctttgttacacatttatgtttagcgtcttctcactt---ttttttgcggtatatggtttgtttaa |
42393822 |
T |
|
| Q |
207 |
ctctgattcaaatgaaaatttatttgagaatgctaacatgtgccctaaggcgcgtgttgaagaacttaataccattgagtttgtatgaacaagacatggt |
306 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42393821 |
ctctgattcaaattaaaatttatttgagaatgctaacatgtgccctaaggcgtgcgttgaagaacttaataccattgagtttgtatgaacaggacatggt |
42393722 |
T |
|
| Q |
307 |
acttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgaggaaggttcaagaggaattagaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42393721 |
acttggtggatcagacacatcctccaataccgttgaatttgcaatggcagaaatgatgaacaaaccaggagtaatgaggaaggttcaagaggaattggaa |
42393622 |
T |
|
| Q |
407 |
gcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcac |
506 |
Q |
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| T |
42393621 |
gcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcac |
42393522 |
T |
|
| Q |
507 |
ttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacgtttggactattca |
606 |
Q |
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| T |
42393521 |
ttccacttctaatgtctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacgtttgggctattca |
42393422 |
T |
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| Q |
607 |
tagagacccttccatttgggagaaaccgctagaatttgatccgacaaggttcttggatggtaaatgggattataaagggaatgactttaattatttccc |
705 |
Q |
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| T |
42393421 |
tagagacccttccatttgggagaaaccgctagaatttgatccgacaaggttcttggatggtaaatgggattataaagggaatgacttcaattatttccc |
42393323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 294 - 705
Target Start/End: Complemental strand, 42377182 - 42376771
Alignment:
| Q |
294 |
aacaagacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgaggaaggttca |
393 |
Q |
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|||| ||||||||| | ||||||||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||| |
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| T |
42377182 |
aacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatggcagaaatgatgaacaaaccagaagtgatgaggaaggttca |
42377083 |
T |
|
| Q |
394 |
agaggaattagaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgt |
493 |
Q |
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| T |
42377082 |
agaggagttagaaactgtggttggaaaagataacttagtagaagagtctcatattcacaagctaacctacttacatgcagtgatgaaagaaactcttcgt |
42376983 |
T |
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| Q |
494 |
ttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacg |
593 |
Q |
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| T |
42376982 |
ttacaccctgcacttccacttttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggatctcgtgtctttatcaacg |
42376883 |
T |
|
| Q |
594 |
tttggactattcatagagacccttccatttgggagaaaccgctagaatttgatccgacaaggttcttggatggtaaatgggattataaagggaatgactt |
693 |
Q |
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||||| |||||||||||||||||| |||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42376882 |
tttgggctattcatagagacccttatgtttgggagaacccactagaatttgatcctacaaggttcttggatggtaaatgggattatagtgggaatgactt |
42376783 |
T |
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| Q |
694 |
taattatttccc |
705 |
Q |
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| T |
42376782 |
caactatttccc |
42376771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 285 - 597
Target Start/End: Complemental strand, 42387539 - 42387228
Alignment:
| Q |
285 |
gtttgtatgaacaagacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgag |
384 |
Q |
| |
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|||| |||||||| ||||||||| | ||||||||||||||||||||||| || ||||||||| ||| ||| |||| ||| |||| |||| ||||||||| |
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| T |
42387539 |
gtttatatgaacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatagcataaatgatggacaa-ccagaagtaatgag |
42387441 |
T |
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| Q |
385 |
gaaggttcaagaggaattagaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaa |
484 |
Q |
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| T |
42387440 |
gaaggttcaagaggaactggaaatcgtggttgggaaagataacttagtagaagagtctcatattcaaaagctaccctacttgcaagcagtaatgaaagaa |
42387341 |
T |
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| Q |
485 |
acccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgt |
584 |
Q |
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| T |
42387340 |
acccttcgtttgcacccaacacttccacttttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggatctcgtgtct |
42387241 |
T |
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| Q |
585 |
ttgtgaacgtttg |
597 |
Q |
| |
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| T |
42387240 |
ttatcaacgtttg |
42387228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 42378044 - 42377959
Alignment:
| Q |
63 |
gttgaatttgaaggaggaaggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttgtt |
148 |
Q |
| |
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|||||||||||||||||| |||||||| |||||||| || |||| || || || |||||||| ||| ||||||||||| |||||| |
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| T |
42378044 |
gttgaatttgaaggaggagggtgattctaagacaccgtttacaaatactcatgttaaggctctactcatggtatgctacttttgtt |
42377959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 652 - 705
Target Start/End: Complemental strand, 42387220 - 42387167
Alignment:
| Q |
652 |
aaggttcttggatggtaaatgggattataaagggaatgactttaattatttccc |
705 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| || |||||||| |
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| T |
42387220 |
aaggttcttggatggtaaatgggattatagtgggaatgacttcaactatttccc |
42387167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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