View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541-Insertion-6 (Length: 634)
Name: NF5541-Insertion-6
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 7 - 495
Target Start/End: Original strand, 628084 - 628583
Alignment:
| Q |
7 |
aaaaagaaagcaccacgaaacaaagaaatagaagctacaacattagagaatggaacacccaaggctaagtaagtaatgggttattccaccaagaattcaa |
106 |
Q |
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| T |
628084 |
aaaaaggaagcaccacgaaacaacgaaatagaagctacaacattagagaatggaacatccaaggctaagtaagtaatggattattccaccaagaattcaa |
628183 |
T |
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| Q |
107 |
ctcaaaagtcaaattttgagacatggcttttaaccaccaccatacaataactttcattttatctaccaattgcaataaagccaattccttgtgacaaaaa |
206 |
Q |
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| T |
628184 |
ctcaaaagtcaaattttgagacatggcttttaaccaccaccatacaataactttcattttatctaccaattgcaataaagccaattccttgtgacaaaaa |
628283 |
T |
|
| Q |
207 |
atacgaaagtttctttctttttaaatggaagccaaccaaatcaattgttggaagagatcttttttggaaacaaagaagaaccgccgaattgaatattaat |
306 |
Q |
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| T |
628284 |
atacgaaagtttctttcttttcaaatggaagccaaccaaatcaattgctggaagagatcttttttggaaacaaagaagaaccgtcgaattgaatattaat |
628383 |
T |
|
| Q |
307 |
atcataatcggaagacataataggaagaacacacgagatatctgatcaatttagaacattagccaaaata-----------tccacactctnnnnnnnga |
395 |
Q |
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| T |
628384 |
agcataatcggaagacatactaggaagaacacacaagatacctggccaatttagaacattagccaaaatatccccaaaaattccacactctaagaaaaga |
628483 |
T |
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| Q |
396 |
tgattaatatatttctctttctaacaacctcttgcacaaaagagagtcagagtctgaagaatgggtgaatattgaattaaagccatgaagatggataaat |
495 |
Q |
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| T |
628484 |
tgattaatatatttctctttctaacaacctcttgcataaaagagagtcagagtctgaagaatgggtgaatattgaattaaagccatgaagatggataaat |
628583 |
T |
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Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 4297163 - 4297065
Alignment:
| Q |
134 |
ttttaaccaccaccatacaataactttcattttatctaccaattgcaataaagccaattccttgtgacaaaaaatacgaaagtttctttctttttaaat |
232 |
Q |
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||||||||||||||| | || ||||||| |||||||| |||||| |||||| | |||| ||||||||||||||||||| ||||||| ||||||||||| |
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| T |
4297163 |
ttttaaccaccaccaaatgatgactttcactttatctaacaattgtaataaatcgaattgcttgtgacaaaaaatacgagagtttctctctttttaaat |
4297065 |
T |
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