View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5541-Insertion-7 (Length: 604)

Name: NF5541-Insertion-7
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5541-Insertion-7
NF5541-Insertion-7
[»] chr4 (16 HSPs)
chr4 (7-281)||(8036270-8036541)
chr4 (349-600)||(8042038-8042289)
chr4 (8-281)||(8416287-8416560)
chr4 (7-262)||(8041684-8041939)
chr4 (7-238)||(9138871-9139102)
chr4 (7-262)||(8410653-8410908)
chr4 (349-516)||(8036609-8036776)
chr4 (433-604)||(8410338-8410509)
chr4 (354-600)||(9139681-9139912)
chr4 (102-238)||(8356480-8356616)
chr4 (102-238)||(8403626-8403762)
chr4 (353-510)||(8416069-8416211)
chr4 (102-238)||(43144839-43144975)
chr4 (102-238)||(8359526-8359662)
chr4 (566-604)||(8036776-8036814)
chr4 (415-483)||(8359968-8360036)
[»] chr7 (1 HSPs)
chr7 (102-238)||(5476165-5476301)
[»] chr2 (1 HSPs)
chr2 (7-62)||(33084019-33084074)


Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 8036270 - 8036541
Alignment:
Q  7 aagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaattgctcaaaactatcatttgaagatgtatctccagaccgagtatat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||| |||||||||||||||||    
T  8036270 aagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaattgctcaaaag---catttgaagatgtaactccagaccgagtatat 8036366  T
Q  107 gtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8036367 gtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagca 8036466  T
Q  207 atatgcagtcaggcaactcactaatcctattttcctgccgctgtcgcttcagttcctggtttgataaacaacttg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8036467 atatgcagtcaggcaactcactaatcctattttcctgccgctgtcgcttcagttcctggttggataaacaacttg 8036541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 349 - 600
Target Start/End: Original strand, 8042038 - 8042289
Alignment:
Q  349 caactttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacc 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8042038 caactttttccaataaattattgtcactgttattataatcttaaaaataaacaatcttaccttatggtttttgatttgttggggtgtgattggcggaacc 8042137  T
Q  449 caattgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtctgtaaaacatacacggaaacttccattaccta 548  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  8042138 caattgtgatttatccactggcgatgaaccctaagaaggtcttttggaaacacaatctcttccgagtctgtaaaacacacacggaaacttccattcccta 8042237  T
Q  549 aatcttcgctaacgcagccttcccaccacctgtgtttccggaacgcctccac 600  Q
    |||||||  |||||| ||||||||||||||  ||||||||||| ||||||||    
T  8042238 aatcttcaataacgcggccttcccaccaccgttgtttccggaaagcctccac 8042289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 8416560 - 8416287
Alignment:
Q  8 agattaagcagtgaatatgagtgatctctattggacagaacccaagacataaattgctcaaaactatcatttgaagatgtatctccagaccgagtatatg 107  Q
    |||||||| || |||||||| ||||||||| |||||||||||||||||||||||| || | | | || ||  |||||||||  |  |||| |||||||||    
T  8416560 agattaagtagggaatatgaatgatctctaatggacagaacccaagacataaatttcttatacccataatacgaagatgtaaatagagacggagtatatg 8416461  T
Q  108 tgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagcaa 207  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||| ||||||||    
T  8416460 tgagagtagtgaggcgtttgcaaagatccttccaccgtttagacaagatacaagtccgaacagcatctcgtgcttcaagaaaactcaatatatggagcaa 8416361  T
Q  208 tatgcagtcaggcaactcactaatcctattttcctgccgctgtcgcttcagttcctggtttgataaacaacttg 281  Q
    || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  8416360 taagcagtcaggcaactcactaatcctattttcccgccgctgtcgcttcagttcctggttggataaacaacttg 8416287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 8041684 - 8041939
Alignment:
Q  7 aagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaattgctcaaaactatcatttgaagatgtatctccagaccgagtatat 106  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||||||||||| || | | || ||||  |||||||||  |  |||| ||||||||    
T  8041684 aagattaagtagggaatatgagtgatctctactggacagaacccaagacataaatttcttagatctttcatacgaagatgtaagtggagacggagtatat 8041783  T
Q  107 gtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | || | |||||||||    
T  8041784 gtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtccgaacagcatctcgtgcttcaagaaaacccaatgtgtggagca 8041883  T
Q  207 atatgcagtcaggcaactcactaatcctattttcctgccgctgtcgcttcagttcc 262  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  8041884 atatgcagtcaggcaaatcactaatcctatcttcctgccgctgtcgcttcagttcc 8041939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 9138871 - 9139102
Alignment:
Q  7 aagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaattgctcaaaactatcatttgaagatgtatctccagaccgagtatat 106  Q
    ||||||||| |||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||  |  |  | ||||||||    
T  9138871 aagattaagtagtgaagatgagtgatctctactcgacagaacccaagacataaattgctcaaaactatcattcgaagatgtaagtaaaaccggagtatat 9138970  T
Q  107 gtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagca 206  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| |||||||||||    
T  9138971 gtgagagtagtgaggcatttgcaaagatccttccaccgtttagacaagatgcaagtccgaacagcatcttgtgcttcaagaaaactcaatatgtggagca 9139070  T
Q  207 atatgcagtcaggcaactcactaatcctattt 238  Q
    ||||||||||||||||||||| ||||||||||    
T  9139071 atatgcagtcaggcaactcacaaatcctattt 9139102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 8410908 - 8410653
Alignment:
Q  7 aagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaattgctcaaaactatcatttgaagatgtatctccagaccgagtatat 106  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || |||||| ||||  ||| |||||| |  |||| ||||||||    
T  8410908 aagattaagcagtgaatatgagtgatctctactggacagaacccaagacataaagttcttaaaactttcatccgaatatgtatgtatagacggagtatat 8410809  T
Q  107 gtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagca 206  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| |||| ||| | |||||    
T  8410808 gtgagagtagtgaggcgtttgcaaagatccttccaccgtttagacaagatgcaagtccgaacagcatctcgtgcttcaagaaaactcaatatctagagca 8410709  T
Q  207 atatgcagtcaggcaactcactaatcctattttcctgccgctgtcgcttcagttcc 262  Q
    ||| ||||||||||||||||||||||||||||||| ||  ||||  ||||||||||    
T  8410708 ataagcagtcaggcaactcactaatcctattttcccgcatctgtgtcttcagttcc 8410653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 349 - 516
Target Start/End: Original strand, 8036609 - 8036776
Alignment:
Q  349 caactttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacc 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8036609 caactttttccaataaattattgtcactgttattataatcttaaaaataaactatcttaccttatggtttttgatttgttggggtgtgactggcggaacc 8036708  T
Q  449 caattgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtc 516  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8036709 caattgtgattaatccactggcgatgaaccctaagaaggtcttttggaaacaccatctcttccaagtc 8036776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 433 - 604
Target Start/End: Complemental strand, 8410509 - 8410338
Alignment:
Q  433 tgtgattggaggaacccaattgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtctgtaaaacatacacgg 532  Q
    ||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||| |  ||||||||||||| |||||     
T  8410509 tgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaagaaggtcttttggaaacacaatctctcctgagtctgtaaaacacacacga 8410410  T
Q  533 aaacttccattacctaaatcttcgctaacgcagccttcccaccacctgtgtttccggaacgcctccactttg 604  Q
    ||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  8410409 aaacttccattccctaaatcttcgctaacacggccttcccaccacctgtgtttccggaacgcctccactttg 8410338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 354 - 600
Target Start/End: Original strand, 9139681 - 9139912
Alignment:
Q  354 ttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacccaatt 453  Q
    |||||||| |||||||||  ||||||||||||||||||||||||||  | |||||||||||||||               |||||||| |||||||||||    
T  9139681 ttttccaacaaattattgctactgttattataatcttaaaaataaactaccttaccttatggttt---------------gtgattgggggaacccaatt 9139765  T
Q  454 gtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtctgtaaaacatacacggaaacttccattacctaaatct 553  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| | || |||||||| |||||||||    
T  9139766 gtgattaatccactggcgatgaatcctaagaaggtcttttggaaacaccatctcttccgagtctgtaaaacacacaagaaatcttccattccctaaatct 9139865  T
Q  554 tcgctaacgcagccttcccaccacctgtgtttccggaacgcctccac 600  Q
     ||||||||| |||||||||||||| |||||| ||||| ||||||||    
T  9139866 gcgctaacgcggccttcccaccaccggtgttttcggaatgcctccac 9139912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 8356480 - 8356616
Alignment:
Q  102 tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtg 201  Q
    ||||||||||| ||| || ||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||| |||||||||||| |||| ||||||    
T  8356480 tatatgtgagaatagggaggcgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacaacatcttctgcttcaagaaaactcaatatgtg 8356579  T
Q  202 gagcaatatgcagtcaggcaactcactaatcctattt 238  Q
    || ||||| |||||| |||||||||||||||||||||    
T  8356580 gaccaataagcagtctggcaactcactaatcctattt 8356616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 8403762 - 8403626
Alignment:
Q  102 tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtg 201  Q
    |||||| |||||||||||  |||||||||||||||||||| |||||||||||||| |||||| ||||||| ||| ||||||||||||| |||| ||||||    
T  8403762 tatatgcgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtctcgtgcttcaagaaaactcattatgtg 8403663  T
Q  202 gagcaatatgcagtcaggcaactcactaatcctattt 238  Q
    ||| | |||||||||||| ||||||| ||||||||||    
T  8403662 gaggagtatgcagtcaggtaactcaccaatcctattt 8403626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 353 - 510
Target Start/End: Complemental strand, 8416211 - 8416069
Alignment:
Q  353 tttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacccaat 452  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||||||||||||               |||||||| ||||||||||    
T  8416211 tttttccaacaaattattgttactgttattataatcttaaaaataaactatcttaccttatggttt---------------gtgattgggggaacccaat 8416127  T
Q  453 tgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttc 510  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  8416126 tgtgattaatccactggcgatgaaccctaagaaggtcttttggaaacacaatctcttc 8416069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 43144839 - 43144975
Alignment:
Q  102 tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtg 201  Q
    ||||| ||||||||||||| |||||||||||||||||||| || ||||||||||| |||||  ||||| | ||| ||||||||||||| |||| ||| ||    
T  43144839 tatatttgagagtagtgacacgtttgcaaagatccttccatcgcttagacaagatgcaagttcgaacaacgtctcgtgcttcaagaaaactcattatatg 43144938  T
Q  202 gagcaatatgcagtcaggcaactcactaatcctattt 238  Q
    ||||| ||||||||| |||||||||||||||| ||||    
T  43144939 gagcagtatgcagtcgggcaactcactaatccaattt 43144975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 8359526 - 8359662
Alignment:
Q  102 tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtg 201  Q
    ||||||||||||||| ||  |||||||||||||||||||| |||||||||||||| |||||  ||||||| ||| | ||||  | ||| |||| ||||||    
T  8359526 tatatgtgagagtagggagacgtttgcaaagatccttccatcgtttagacaagatgcaagttcgaacagcgtctcgagctttcaaaaaactcattatgtg 8359625  T
Q  202 gagcaatatgcagtcaggcaactcactaatcctattt 238  Q
    ||||| |||||||||||| |||| ||| ||| |||||    
T  8359626 gagcagtatgcagtcaggtaacttactgatcatattt 8359662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 566 - 604
Target Start/End: Original strand, 8036776 - 8036814
Alignment:
Q  566 ccttcccaccacctgtgtttccggaacgcctccactttg 604  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8036776 ccttcccaccacctgtgtttccggaacgcctccactttg 8036814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 483
Target Start/End: Original strand, 8359968 - 8360036
Alignment:
Q  415 gtttttgatttgttggggtgtgattggaggaacccaattgtgatttatccactggcgttgaaccctaag 483  Q
    |||||||| |||||||  ||||||| | ||||||||||||||||| ||||| |  || |||||||||||    
T  8359968 gtttttgagttgttggtttgtgattcggggaacccaattgtgattaatccatttacgatgaaccctaag 8360036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 5476301 - 5476165
Alignment:
Q  102 tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtg 201  Q
    ||||||||||||||||||  |||||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||||||||||||| |||| ||||||    
T  5476301 tatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcatctcgtgcttcaagaaaactcattatgtg 5476202  T
Q  202 gagcaatatgcagtcaggcaactcactaatcctattt 238  Q
    ||| | |||||||||||| ||||||||||||||||||    
T  5476201 gaggagtatgcagtcaggtaactcactaatcctattt 5476165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 33084074 - 33084019
Alignment:
Q  7 aagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaatt 62  Q
    ||||||||| |||||| | |||||||||||| ||||||||| ||||||||||||||    
T  33084074 aagattaagtagtgaacaggagtgatctctactggacagaatccaagacataaatt 33084019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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