View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5541_high_12 (Length: 398)
Name: NF5541_high_12
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 51547119 - 51547489
Alignment:
| Q |
17 |
agattctgcttcaggtacactgaagcaagttttagttgattcagtgatcaacacttacaagcatgttagtaattctctgtcaatgtttcctaagcctgag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51547119 |
agattctgcttcaggtacactgaagcaagttttagttgattcagtgatcaacacttacaaacatgttagtaattctctgtcaatgtttcctaagcctgag |
51547218 |
T |
|
| Q |
117 |
gtaagagcttctaaaggacatggaaaccggcgtttaatggatgctctcacgtggttatcaagcaaagatcgccgcaggttcttgcaaagcaccgacaatg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51547219 |
gtaagagcttctaaaggacatggaaaccggcgtttaatggatgctctcatgtggttatcaagcaaagatcaccgcaggttcttgcaaagcaccgacaatg |
51547318 |
T |
|
| Q |
217 |
tgattgttgtggctgcagatggaacgggaaactttagcaccattaatgaagccattgaatttgctccaaataacagctatgctaggataataatctatgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51547319 |
tgattgttgtggctgcagatggaacgggaaactttagcaccattaatgaagccattgaatttgctccaaataacagctatgctaggataataatctatgt |
51547418 |
T |
|
| Q |
317 |
aaaagaagggatatatgaggaaaatgttgaaatttcaagcaataaaaccaatattgttctacttgatgatg |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51547419 |
aaaagaagggatatatgaggaaaatgttgaaatttcaagcaataaaaccaatattgttctacttggtgatg |
51547489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 349
Target Start/End: Original strand, 19475223 - 19475343
Alignment:
| Q |
229 |
ctgcagatggaacgggaaactttagcaccattaatgaagccattgaatttgctccaaataacagctatgctaggataataatctatgtaaaagaagggat |
328 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| || || | |||||||||||||| || | | ||||||| | || ||||| ||||||||| |
|
|
| T |
19475223 |
ctgcagatggaagtggaaactttagcactattaatgatgctataaactttgctccaaataatagtttggttaggatagttatttatgttaaagaagggta |
19475322 |
T |
|
| Q |
329 |
atatgaggaaaatgttgaaat |
349 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
19475323 |
ttatgatgaaaatgttgaaat |
19475343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University