View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_high_13 (Length: 396)
Name: NF5541_high_13
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 204 - 382
Target Start/End: Original strand, 30837546 - 30837726
Alignment:
| Q |
204 |
ggatgagagttaatcatctttagtgatacaactctcttattttattgtggacat--atacactaatgaaagccatatgataacactaacttttaaatttg |
301 |
Q |
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| T |
30837546 |
ggatgagagttaatcatctttagtgatacaactctcttattttattgtggacatttatacactaatgaaagccatatgataacactaacttttaaatttg |
30837645 |
T |
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| Q |
302 |
tgcactgagtatattgaattctgctcttcttccaacatattttgctcgcgttgaacacattttacgagctggtgtttgtcc |
382 |
Q |
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| T |
30837646 |
tgcacttagtatattgaattttgttcatcttccaacacattttgctcgcgttcaacacattttaccagctggtgtttgtcc |
30837726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 30837351 - 30837507
Alignment:
| Q |
1 |
aggtgtgaggatggggcgtttaagtatgaaagttgtgtagtttgttatctgcggtagtatgtaggttgaggggttaaaatgtttatttcatgtaattttc |
100 |
Q |
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| T |
30837351 |
aggtgtgaggatggggcgtttaagtatgaaagttgtgtagtttgttatctgcggtagtatgtaggttgaggggttaaaatgtttatttcatctaattttc |
30837450 |
T |
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| Q |
101 |
aaagaaaatatcannnnnnnacatggataaatttaacatttacatggataattctcaaacacggg |
165 |
Q |
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| T |
30837451 |
aaagaaaatatcat--------atttttacatttaacacttacatggataattctcaaacacggg |
30837507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 30839446 - 30839519
Alignment:
| Q |
204 |
ggatgagagttaatcatctttagtgatacaactctcttattttattgtggacatatacactaatgaaagccatatg |
279 |
Q |
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| T |
30839446 |
ggatgaaacttaatcatctttggtcatacaactctcttattttattgtggac--gtacactaacgaaagccatatg |
30839519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 16100766 - 16100803
Alignment:
| Q |
315 |
ttgaattctgctcttcttccaacatattttgctcgcgt |
352 |
Q |
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| T |
16100766 |
ttgaattctgctcttcttccaacacattttgctcgcgt |
16100803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 46844787 - 46844750
Alignment:
| Q |
315 |
ttgaattctgctcttcttccaacatattttgctcgcgt |
352 |
Q |
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| T |
46844787 |
ttgaattctgctcttctcccaatatattttgctcgcgt |
46844750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 349
Target Start/End: Original strand, 50971916 - 50971948
Alignment:
| Q |
317 |
gaattctgctcttcttccaacatattttgctcg |
349 |
Q |
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| T |
50971916 |
gaattctgctcttcttccagcatattttgctcg |
50971948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 29715082 - 29715046
Alignment:
| Q |
315 |
ttgaattctgctcttcttccaacatattttgctcgcg |
351 |
Q |
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| T |
29715082 |
ttgaattctgctcttcttccaacaagttttgctcgcg |
29715046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 349
Target Start/End: Original strand, 3781804 - 3781836
Alignment:
| Q |
317 |
gaattctgctcttcttccaacatattttgctcg |
349 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
3781804 |
gaattctgctcttcttccaacacattttgctcg |
3781836 |
T |
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