View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5541_high_14 (Length: 367)

Name: NF5541_high_14
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5541_high_14
NF5541_high_14
[»] chr6 (1 HSPs)
chr6 (13-348)||(24071757-24072094)
[»] chr3 (8 HSPs)
chr3 (13-345)||(28580132-28580474)
chr3 (21-348)||(26316134-26316470)
chr3 (25-348)||(28586286-28586606)
chr3 (127-348)||(28575076-28575297)
chr3 (127-348)||(28568236-28568457)
chr3 (127-322)||(20618506-20618700)
chr3 (24-85)||(28575353-28575414)
chr3 (48-85)||(28568517-28568554)
[»] scaffold0889 (1 HSPs)
scaffold0889 (128-348)||(4431-4649)
[»] scaffold0870 (1 HSPs)
scaffold0870 (128-348)||(4635-4853)
[»] scaffold1029 (2 HSPs)
scaffold1029 (127-296)||(3159-3328)
scaffold1029 (13-85)||(3034-3111)
[»] scaffold1033 (2 HSPs)
scaffold1033 (127-238)||(3159-3270)
scaffold1033 (13-85)||(3034-3111)
[»] chr8 (1 HSPs)
chr8 (13-79)||(34812926-34812992)


Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 24072094 - 24071757
Alignment:
Q  13 aatatctccaactataaacattgaatcaagtccgttttactatcaaagcattaatttccagaatggtacgtatgataatagatatacatatgttctgaat 112  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  24072094 aatatctccaactataaacattgaatcaagtctgttttactatcaaagcattaatttccagaatggtaagtattttaatagatatacatatgttctgaat 24071995  T
Q  113 ttacaatatat--tcatatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagttt 210  Q
    |||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24071994 ttacaatatatattcatattttaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagttt 24071895  T
Q  211 atgacaaacttgttaaaatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaa 310  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24071894 atgagaaacttgttaaaatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaa 24071795  T
Q  311 agtggctcttgaaaacttgcatttgatattgaacacca 348  Q
    || |||||||||||||||||||||||||||||||||||    
T  24071794 agcggctcttgaaaacttgcatttgatattgaacacca 24071757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 28580474 - 28580132
Alignment:
Q  13 aatatctccaactataaacattgaatcaagtccgttttactatcaaagcattaatttccagaatggtacgtatgataataga----------tatacata 102  Q
    |||||| ||| ||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||| ||||  |||| ||          ||||||      
T  28580474 aatatccccagctataaacactgaatcaagtctgttttattatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatatacaat 28580375  T
Q  103 tgttctgaatttacaatatattcatatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaa 202  Q
    |||||| |||||| ||||| ||  |||| |||||||||||||||| | ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||    
T  28580374 tgttctaaatttagaatatctttttattgcaatgttctgatcaatctacacttttacattttcaggacgttacatatgtcaaacaagctttgatattcaa 28580275  T
Q  203 gcaagtttatgacaaacttgttaaaatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgac 302  Q
    |||||||||| | |||||||||||||||||||||||||||||  ||||||||||||| ||||| ||||||| ||||| ||||||||||||||||   ||     
T  28580274 gcaagtttataagaaacttgttaaaatcgaagatccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttaccgag 28580175  T
Q  303 gagatcaaagtggctcttgaaaacttgcatttgatattgaaca 345  Q
    |||||||||||||||||||||||  | ||||||||||||||||    
T  28580174 gagatcaaagtggctcttgaaaaactacatttgatattgaaca 28580132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 21 - 348
Target Start/End: Complemental strand, 26316470 - 26316134
Alignment:
Q  21 caactataaacattgaatcaagtccgttttactatcaaagcattaatttccagaatggtacgtatgataatagatatacatat----------gttctga 110  Q
    |||| ||||||| ||||||||||  |||||||||||||| |||||||||  ||||||||| ||||  |||| ||  |||| ||          |||||      
T  26316470 caaccataaacactgaatcaagtttgttttactatcaaatcattaatttatagaatggtaagtattttaattgaagtacaaatatataaagttgttctag 26316371  T
Q  111 atttacaatatattcatatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagttt 210  Q
    ||||||||||||||  |||||||||||||| |||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26316370 atttacaatatattt-tatttcaatgttctcatcattctgcacttttacattttcaggatgttacatatgtcaaacaagctttgatatttaagcaagttt 26316272  T
Q  211 atgacaaacttgttaaaatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaa 310  Q
    || | |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||||||| ||||||||    
T  26316271 ataagaaacttgttaaaatcgaatatccgatggagagtttttatttgatcgatatcatccaaaggcttaacattgaacactactttgttgaagagatcaa 26316172  T
Q  311 agtggctcttgaaaacttgcatttgatattgaacacca 348  Q
    |||||||||||| ||  |  ||| ||||||||||||||    
T  26316171 agtggctcttgagaagctatattcgatattgaacacca 26316134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 25 - 348
Target Start/End: Complemental strand, 28586606 - 28586286
Alignment:
Q  25 tataaacattgaatcaagtccgttttactatcaaagcattaatttccagaatggtacgtatgataatagatatacatatgttctgaatttacaatatatt 124  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||   |||| |   ||||  |||    ||     ||| ||||    
T  28586606 tataaacactgaatcaagtctgttttactatcaaagcattaatttccagaatggtaagtaatttaattggagtacagttgtatcaaaga---aatgtatt 28586510  T
Q  125 catatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaacttgtt 224  Q
      ||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||    
T  28586509 tttatttcaatattctgatcaatctgcacttttacattttcaggatgttacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgtt 28586410  T
Q  225 aaaatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagtggctcttgaaa 324  Q
    ||||| ||||||||||||||  ||||||||||||||||||| ||||||| ||||| |||||||||||| |||| ||| ||||||||||||||||||||||    
T  28586409 aaaattgaagatccgatggaaagtttttatttgatcgatattatccaaaggtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaa 28586310  T
Q  325 acttgcatttgatattgaacacca 348  Q
    |  | ||||||| |||||||||||    
T  28586309 agctacatttgacattgaacacca 28586286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 127 - 348
Target Start/End: Complemental strand, 28575297 - 28575076
Alignment:
Q  127 tatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaacttgttaa 226  Q
    ||||||||||||||||||||| |||||||| || ||||||||||||||| ||||| || ||||||||||||||||||||||||||| | |||||||||||    
T  28575297 tatttcaatgttctgatcaatctgcactttgactttttcaggatgttacatatgttaagcaagctttgatatttaagcaagtttataagaaacttgttaa 28575198  T
Q  227 aatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagtggctcttgaaaac 326  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |||| ||| |||||||||||||||||||||||     
T  28575197 aatcgaagattcgatggagagtttttatttgatcgatatcatccaaaggtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaaag 28575098  T
Q  327 ttgcatttgatattgaacacca 348  Q
     | |||||||||||||||||||    
T  28575097 ctacatttgatattgaacacca 28575076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 127 - 348
Target Start/End: Complemental strand, 28568457 - 28568236
Alignment:
Q  127 tatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaacttgttaa 226  Q
    ||||||||| ||||||||||| |||||| ||||| ||| ||||||||   ||||||||||||||||| |||||||||||||||||| | |||||||||||    
T  28568457 tatttcaatattctgatcaatctgcactcttacaattttaggatgttgtatatgtcaaacaagctttaatatttaagcaagtttataagaaacttgttaa 28568358  T
Q  227 aatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagtggctcttgaaaac 326  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||||| |||||  ||||| ||||| |||| ||| || || |||||||||||||||||     
T  28568357 aatcgaagatccgatggagagtttttatttgatggatattatccaaaggtttggtattgagcactattttgctgaggaaataaaagtggctcttgaaaat 28568258  T
Q  327 ttgcatttgatattgaacacca 348  Q
     |||||||||||||||||||||    
T  28568257 ctgcatttgatattgaacacca 28568236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 127 - 322
Target Start/End: Complemental strand, 20618700 - 20618506
Alignment:
Q  127 tatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaacttgttaa 226  Q
    |||||||||||| |||||||||| |  || ||||||||||||||| || ||||||||| ||||||||||| | |||||||||| |  | ||||||||||     
T  20618700 tatttcaatgttatgatcaatat-ctgttctacattttcaggatgctatttatgtcaagcaagctttgatgtgtaagcaagttcacaagaaacttgttac 20618602  T
Q  227 aatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagtggctcttga 322  Q
     |  |||||||| |  |||  |||| ||||||| || |||||||||| | |||  |||||||||||||||||||| || |||||||||||||||||    
T  20618601 tagtgaagatccaactgagaattttcatttgattgacatcatccaaaggcttggtattgaacactactttgttgaggaaatcaaagtggctcttga 20618506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 28575414 - 28575353
Alignment:
Q  24 ctataaacattgaatcaagtccgttttactatcaaagcattaatttccagaatggtacgtat 85  Q
    |||||||||  |||||||||| |||||| |||||||||||||||||| ||||||||| ||||    
T  28575414 ctataaacaccgaatcaagtctgttttattatcaaagcattaatttctagaatggtaagtat 28575353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 28568554 - 28568517
Alignment:
Q  48 tttactatcaaagcattaatttccagaatggtacgtat 85  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  28568554 tttactatcaaagcattaatttctagaatggtaagtat 28568517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0889 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: scaffold0889
Description:

Target: scaffold0889; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 128 - 348
Target Start/End: Original strand, 4431 - 4649
Alignment:
Q  128 atttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaacttgttaaa 227  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||   ||||||||||||||||||||||||||| |||||||| | ||||||||||||    
T  4431 atttcaatgttctgatcaat--gcacttttacatttttaggatgttttatatgtcaaacaagctttgatatttaagaaagtttataagaaacttgttaaa 4528  T
Q  228 atcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagtggctcttgaaaact 327  Q
    ||||||||||| |||||| ||||||||||||||||||| ||||||| |||||  ||||||||||| |||| ||| || || || ||||||||||||||      
T  4529 atcgaagatcccatggagagtttttatttgatcgatattatccaaaggtttggtattgaacactattttgctgaggaaataaatgtggctcttgaaaatc 4628  T
Q  328 tgcatttgatattgaacacca 348  Q
    |||||||||||||||||||||    
T  4629 tgcatttgatattgaacacca 4649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0870 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: scaffold0870
Description:

Target: scaffold0870; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 128 - 348
Target Start/End: Original strand, 4635 - 4853
Alignment:
Q  128 atttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaacttgttaaa 227  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||   ||||||||||||||||||||||||||| |||||||| | ||||||||||||    
T  4635 atttcaatgttctgatcaat--gcacttttacatttttaggatgttttatatgtcaaacaagctttgatatttaagaaagtttataagaaacttgttaaa 4732  T
Q  228 atcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagtggctcttgaaaact 327  Q
    ||||||||||| |||||| ||||||||||||||||||| ||||||| |||||  ||||||||||| |||| ||| || || || ||||||||||||||      
T  4733 atcgaagatcccatggagagtttttatttgatcgatattatccaaaggtttggtattgaacactattttgctgaggaaataaatgtggctcttgaaaatc 4832  T
Q  328 tgcatttgatattgaacacca 348  Q
    |||||||||||||||||||||    
T  4833 tgcatttgatattgaacacca 4853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 127 - 296
Target Start/End: Original strand, 3159 - 3328
Alignment:
Q  127 tatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaacttgttaa 226  Q
    |||||||| || ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | |||||||||||    
T  3159 tatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaa 3258  T
Q  227 aatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactacttt 296  Q
    ||||||||||||||||||  ||||||||||||| ||||| ||||||| ||||| ||||||||||||||||    
T  3259 aatcgaagatccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactacttt 3328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 3034 - 3111
Alignment:
Q  13 aatatctccaactataaacattgaatcaagtccgt-----tttactatcaaagcattaatttccagaatggtacgtat 85  Q
    |||||| ||| ||||||||| ||||||||||| ||     ||||||||||||||||||||||||||||||||| ||||    
T  3034 aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtat 3111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 3159 - 3270
Alignment:
Q  127 tatttcaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgacaaacttgttaa 226  Q
    |||||||| || ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | |||||||||||    
T  3159 tatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaa 3258  T
Q  227 aatcgaagatcc 238  Q
    ||||||||||||    
T  3259 aatcgaagatcc 3270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 3034 - 3111
Alignment:
Q  13 aatatctccaactataaacattgaatcaagtccgt-----tttactatcaaagcattaatttccagaatggtacgtat 85  Q
    |||||| ||| ||||||||| ||||||||||| ||     ||||||||||||||||||||||||||||||||| ||||    
T  3034 aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtat 3111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 34812926 - 34812992
Alignment:
Q  13 aatatctccaactataaacattgaatcaagtccgttttactatcaaagcattaatttccagaatggt 79  Q
    |||||||||| |||||||||  |||||||||| |||||| ||||||||||||||||| |||||||||    
T  34812926 aatatctccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggt 34812992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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