View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5541_high_16 (Length: 335)
Name: NF5541_high_16
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 7739863 - 7739539
Alignment:
| Q |
1 |
caaatgctgatgatgttgagttctcctgcaacgccaatgacaaagccaccctcctcaaaatcagagaccatttcggcggccccaacggccgcctttccga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7739863 |
caaatgctgatgatgttgagttctcctgcaacgccaatgacaaagccaccctcctcaaaatcagagaccatttcggcggccccaacggccgcctttccga |
7739764 |
T |
|
| Q |
101 |
ttgggacaacggtacagactgttgtagcgactggagcttcgtcgggtgtggcaaacccctacctggccgaatcaccgttgtcacaatcagccgtggctgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7739763 |
ttgggacaacggtacagactgttgtagcgactggagcttcgtcgggtgtggtaaacccctacctggccgaatcaccgtcgtcaccatcagccgtggctgg |
7739664 |
T |
|
| Q |
201 |
ggtctttccggtatgctaccagcggactttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggcctattcctaact |
300 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7739663 |
ggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggccaattcctaact |
7739564 |
T |
|
| Q |
301 |
ctttcaacaaactccaaagactaca |
325 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
7739563 |
ctttcagcaaactccaaagactaca |
7739539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 7731705 - 7731381
Alignment:
| Q |
1 |
caaatgctgatgatgttgagttctcctgcaacgccaatgacaaagccaccctcctcaaaatcagagaccatttcggcggccccaacggccgcctttccga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7731705 |
caaatgctgatgatgttgagttctcctgcaacgccaatgacaaagccaccctcctcaaaatcagagaccatttcggcggccccaacggccgcctttccga |
7731606 |
T |
|
| Q |
101 |
ttgggacaacggtacagactgttgtagcgactggagcttcgtcgggtgtggcaaacccctacctggccgaatcaccgttgtcacaatcagccgtggctgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7731605 |
ttgggacaacggtacagactgttgtagcgactggagcttcgtcgggtgtggtaaacccctacctggccgaatcaccgtcgtcaccatcagccgtggctgg |
7731506 |
T |
|
| Q |
201 |
ggtctttccggtatgctaccagcggactttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggcctattcctaact |
300 |
Q |
| |
|
||||||||||||| ||| |||| || ||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||| |
|
|
| T |
7731505 |
ggtctttccggtacgcttccagtagagtttggcgacctcccttatcttaacttcctctcattagccgaaatgccgaaagtaactgggccaatccctaact |
7731406 |
T |
|
| Q |
301 |
ctttcaacaaactccaaagactaca |
325 |
Q |
| |
|
|||| | ||||||| |||||||||| |
|
|
| T |
7731405 |
cttttagcaaactcaaaagactaca |
7731381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 7727545 - 7727221
Alignment:
| Q |
1 |
caaatgctgatgatgttgagttctcctgcaacgccaatgacaaagccaccctcctcaaaatcagagaccatttcggcggccccaacggccgcctttccga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7727545 |
caaatgctgatgatgttgagttctcctgcaatgccaatgacaaagccactctcctcaaaatcagagaccatttcggcggccccaacggccgcctctccga |
7727446 |
T |
|
| Q |
101 |
ttgggacaacggtacagactgttgtagcgactggagcttcgtcgggtgtggcaaacccctacctggccgaatcaccgttgtcacaatcagccgtggctgg |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7727445 |
ttgggacaacagtacagactgttgtagcgactggagcttcgtcgggtgtggcaaacccctacctggccgaatcaccgtcgtcaccatcagccgtggctgg |
7727346 |
T |
|
| Q |
201 |
ggtctttccggtatgctaccagcggactttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggcctattcctaact |
300 |
Q |
| |
|
|||||||| |||| ||| ||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || || || ||||||| |
|
|
| T |
7727345 |
ggtctttctggtacgcttccagcagagtttggcgacctcccatatcttaacttcctctcattggctgaaatgcccaaagtaaccggaccaatccctaact |
7727246 |
T |
|
| Q |
301 |
ctttcaacaaactccaaagactaca |
325 |
Q |
| |
|
|||||| ||||||| |||||||||| |
|
|
| T |
7727245 |
ctttcagcaaactcaaaagactaca |
7727221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 21 - 325
Target Start/End: Complemental strand, 7699660 - 7699359
Alignment:
| Q |
21 |
ttctcctgcaacgccaatgacaaagccaccctcctcaaaatcagagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagact |
120 |
Q |
| |
|
|||| |||||||||| | ||||||||| |||||||||||||||||||||||||||| || ||||| |||||||| ||| ||||||||| || || | |
|
|
| T |
7699660 |
ttcttctgcaacgccgacgacaaagccgccctcctcaaaatcagagaccatttcggtggtcccaaaggccgcctcgacgactgggacaacaacaccgaat |
7699561 |
T |
|
| Q |
121 |
gttgtagcgactggagcttcgtcgggtgtggcaaacccctacctggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatgctacc |
220 |
Q |
| |
|
||||| ||||||||||||||||| || |||| ||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||| || |
|
|
| T |
7699560 |
gttgt---gactggagcttcgtcggttgcggcagaccttatcctggccgagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttcc |
7699464 |
T |
|
| Q |
221 |
agcggactttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactccaaaga |
320 |
Q |
| |
|
|||||| |||||| |||| || ||||||| | | |||||||||||||||||||| |||||||||||||| || ||||||||||| | ||||||||||||| |
|
|
| T |
7699463 |
agcggagtttggcaacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactgggccaatccctaactcttttagcaaactccaaaga |
7699364 |
T |
|
| Q |
321 |
ctaca |
325 |
Q |
| |
|
||||| |
|
|
| T |
7699363 |
ctaca |
7699359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 323
Target Start/End: Complemental strand, 7714005 - 7713706
Alignment:
| Q |
21 |
ttctcctgcaacgccaatgacaaagccaccctcctcaaaatcagagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagact |
120 |
Q |
| |
|
|||| |||||||||| | ||||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||| ||| ||||||||| || || | |
|
|
| T |
7714005 |
ttcttctgcaacgccgacgacaaagccgccctcctcaaaatcagagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactgaat |
7713906 |
T |
|
| Q |
121 |
gttgtagcgactggagcttcgtcgggtgtggcaaacccctacctggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatgctacc |
220 |
Q |
| |
|
||||| ||||||| |||||| || || |||| ||| ||||||||| |||||| ||||| ||| |||||||||||||||||||||||| || || |
|
|
| T |
7713905 |
gttgt---gactggaacttcgtaggttgcggcagaccttatcctggccgagtcaccggcgtcaccatcggccgtggctggggtctttccggtacacttcc |
7713809 |
T |
|
| Q |
221 |
agcggactttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactccaaaga |
320 |
Q |
| |
|
|||||| ||||||||||| || ||||||| | | |||||||||||||||||||| |||||||||||||| || ||||||||||||| ||||||| ||||| |
|
|
| T |
7713808 |
agcggagtttggcgacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactgggccaatccctaactctttcagcaaactcaaaaga |
7713709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 12907799 - 12907901
Alignment:
| Q |
24 |
tcctgcaacgccaatgacaaagccaccctcctcaaaatcagagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagactgtt |
123 |
Q |
| |
|
|||||| || ||||||| ||||| | ||||||||||| |||||||||||||||||||| ||||| | ||| ||||| ||| ||| | | ||||||||| |
|
|
| T |
12907799 |
tcctgccaccccaatgataaagctgctctcctcaaaataagagaccatttcggcggccctaacggacccctatccgactggcacaccaatgcagactgtt |
12907898 |
T |
|
| Q |
124 |
gta |
126 |
Q |
| |
|
||| |
|
|
| T |
12907899 |
gta |
12907901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University