View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_high_17 (Length: 312)
Name: NF5541_high_17
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 7798858 - 7798598
Alignment:
| Q |
17 |
ataaccatggtagttcccaatatagtcataaataaaagaagaacacgtgcaaaatgactattttcaagcttcttcttcaattgttggttgctagatggtg |
116 |
Q |
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| T |
7798858 |
ataaccatggtagttcccaatatagtcataaataaaagaagaacacgtgcaaaatgactattttcaagcttcttcttcaattgttggttgctagatggtg |
7798759 |
T |
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| Q |
117 |
tttctaatttgtagttagaaagctccatgtcctctggttgttgatttggaatcaaactcacattggcatgcctacatagcaatgaatatagtgcaaatgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7798758 |
tttctaatttgtagttagaaagctccatgtcctctggttgttgatttggaatcaaactcacattggcatgcctacatagcaatgaatatagtgcaaatgc |
7798659 |
T |
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| Q |
217 |
cccacctaaataaaaagccaaaacaatctcattaaatattttacttatgtactattatttt |
277 |
Q |
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| T |
7798658 |
cccacctaaataaaaagccaaaacaatctcattaaatattttacttatgtactattatttt |
7798598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 7818129 - 7817869
Alignment:
| Q |
17 |
ataaccatggtagttcccaatatagtcataaataaaagaagaacacgtgcaaaatgactattttcaagcttcttcttcaattgttggttgctagatggtg |
116 |
Q |
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| T |
7818129 |
ataaccatggtagttcccaatatagtcataaataaaagaagaacacgtgcaaaatgactattttcaagcttcttcttcaattgttggttgctagatggtg |
7818030 |
T |
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| Q |
117 |
tttctaatttgtagttagaaagctccatgtcctctggttgttgatttggaatcaaactcacattggcatgcctacatagcaatgaatatagtgcaaatgc |
216 |
Q |
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| T |
7818029 |
tttctaatttgtagttagaaagctccatgtcctctggttgttgatttggaatcaaactcacattggcatgcctacatagcaatgaatatagtgcaaatgc |
7817930 |
T |
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| Q |
217 |
cccacctaaataaaaagccaaaacaatctcattaaatattttacttatgtactattatttt |
277 |
Q |
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| T |
7817929 |
cccacctaaataaaaagccaaaacaatctcattaaatattttacttatgtactattatttt |
7817869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 41131201 - 41131319
Alignment:
| Q |
106 |
gctagatggtgtttctaatttgtagttagaaagctccatgtcctctggttgttgatttggaatcaaactcacattggcatgcctacatagcaatgaatat |
205 |
Q |
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|||||||||| |||||| |||||| ||||| || |||||||| || ||||||||||| ||| |||||||| || ||||||||||| ||| || ||| |
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| T |
41131201 |
gctagatggtatttctagtttgtaattagagagttccatgtcttcaggttgttgattgggagccaaactcatctttatatgcctacatatcaacgagtat |
41131300 |
T |
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| Q |
206 |
agtgcaaatgccccaccta |
224 |
Q |
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|||||||| || ||||||| |
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| T |
41131301 |
agtgcaaacgctccaccta |
41131319 |
T |
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