View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5541_high_18 (Length: 303)

Name: NF5541_high_18
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5541_high_18
NF5541_high_18
[»] chr3 (1 HSPs)
chr3 (1-291)||(54201985-54202275)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 54201985 - 54202275
Alignment:
Q  1 tgaggagcaaacaacaaaagcacttaaaaaatggcaaaaggcagcaagagataagaggaagttaaggaatgcaggatcaatagagattccttcagtgagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54201985 tgaggagcaaacaacaaaagcacttaaaaaatggcaaaaggcagcaagagataagaggaagttaaggaatgcaggatcaatagagattccttcagtgagt 54202084  T
Q  101 ggagacacaacaccaagccaaggaacatcacctttgcacttgcttcacaagttcaaacctagtaaccaaacagacacagatagtgttctatattctccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54202085 ggagacacaacaccaagccaaggaacatcacctttgcacttgcttcacaagttcaaacctagtaaccaaacagacacagatagtgttctatattctccaa 54202184  T
Q  201 gatcataccaatctgaaactgatttttcagacacagaaggatctacacaccaattaaatttgaatcaaattatgtcaccacctcaacacca 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54202185 gatcataccaatctgaaactgatttttcagacacagaaggatctacacaccaattaaatttgaatcaaattatgtcaccacctcaacacca 54202275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University