View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_high_25 (Length: 250)
Name: NF5541_high_25
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 7761321 - 7761544
Alignment:
| Q |
12 |
attctcactaagtttcctttcagtacaccgagaacatcgtgatgagaccataatctgctgcgttcaccagggtttgatgtcgactccttccgaacaatct |
111 |
Q |
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| T |
7761321 |
attctcactaagtttcctttcagtacaccgagaacatcgtgatgagaccataatctgctgcgttcaccagggtttgatgtcgactccttccgaacaatct |
7761420 |
T |
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| Q |
112 |
ctctacccatgtcttgtattaaatcatgcatttctatacaaccattttcatcaacagttaggagacatttactaacaaatactcgtataactgggaaaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7761421 |
ctctacccatgtcttgtattaaatcatgcatttctatacaaccattttcatcaacagttaagagacatttactaacaaatactcgtataactgggaaaaa |
7761520 |
T |
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| Q |
212 |
atcacaagcttcttgtatcctttt |
235 |
Q |
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|||||||||||||||||||||||| |
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| T |
7761521 |
atcacaagcttcttgtatcctttt |
7761544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 7754234 - 7754445
Alignment:
| Q |
24 |
tttcctttcagtacaccgagaacatcgtgatgagaccataatctgctgcgttcaccagggtttgatgtcgactccttccgaacaatctctctacccatgt |
123 |
Q |
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||||||||||||||| | |||||||| | ||||||||| |||||||| |||||||||||||||||||| || || ||||| ||||||||||||||||||| |
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| T |
7754234 |
tttcctttcagtacatcaagaacatctttatgagaccacaatctgctacgttcaccagggtttgatgttgattctttccgtacaatctctctacccatgt |
7754333 |
T |
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| Q |
124 |
cttgtattaaatcatgcatttctatacaaccattttcatcaacagttaggagacatttactaacaaatactcgtataactgggaaaaaatcacaagcttc |
223 |
Q |
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| T |
7754334 |
cttgtattagatcatgcatttgtagcaaaccattttcatcaacagttatgagacatttactattaaacgctcgtataactgggtagaaatcacaagcgtc |
7754433 |
T |
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| Q |
224 |
ttgtatcctttt |
235 |
Q |
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| |||||||||| |
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| T |
7754434 |
tagtatcctttt |
7754445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 7837738 - 7837961
Alignment:
| Q |
12 |
attctcactaagtttcctttcagtacaccgagaacatcgtgatgagaccataatctgctgcgttcaccagggtttgatgtcgactccttccgaacaatct |
111 |
Q |
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||||| || |||||||||||||| ||| | ||| |||| | |||||||||||| ||||||||||||||||||||||| ||||| || ||||||| ||||| |
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| T |
7837738 |
attcttaccaagtttcctttcagcacatcaagagcatctttatgagaccataacctgctgcgttcaccagggtttgaagtcgattctttccgaataatct |
7837837 |
T |
|
| Q |
112 |
ctctacccatgtcttgtattaaatcatgcatttctatacaaccattttcatcaacagttaggagacatttactaacaaatactcgtataactgggaaaaa |
211 |
Q |
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||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||| | || |
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| T |
7837838 |
ctctacccatgtcttgtattagatcatgcatctctaaacaaccattttcatcaacaattaacagacatttgctaacaaagactcgtataactgggtagaa |
7837937 |
T |
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| Q |
212 |
atcacaagcttcttgtatcctttt |
235 |
Q |
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| ||||||| || |||||||||| |
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| T |
7837938 |
accacaagcatcgagtatcctttt |
7837961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 7828590 - 7828478
Alignment:
| Q |
53 |
atgagaccataatctgctgcgttcaccagggtttgatgtcgactccttccgaacaatctctctacccatgtcttgtattaaatcatgcatttctatacaa |
152 |
Q |
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|||| ||||||| |||||||| | ||||||| || || ||| | ||| | ||||| |||||||||||| |||||||||| ||||||||| || | || |
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| T |
7828590 |
atgataccataacctgctgcggttaccagggattaatagcgatttctttctaacaacctctctacccatatcttgtattagatcatgcatctccaagcag |
7828491 |
T |
|
| Q |
153 |
ccattttcatcaa |
165 |
Q |
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| T |
7828490 |
ccattttcatcaa |
7828478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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