View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_high_31 (Length: 233)
Name: NF5541_high_31
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 55178475 - 55178257
Alignment:
| Q |
1 |
agttatgcagtcatcaaaagaagctttcaaagattttgcacttgaagttgaaataatgtcctcgttgaaccacccacgcatcgctcctctgctagggatt |
100 |
Q |
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| T |
55178475 |
agttatgcagtcatcaaaagaagctttcaaagattttgcacttgaagttgaaataatgtcctcgttgaaccacccacgcatcgctcctctgctagggatt |
55178376 |
T |
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| Q |
101 |
tgtattagagatgagacttcgatatctgtttatgattatttcccccaaggaaccttagaccaaaatctacgcggttagtcctactaatatttcttctctt |
200 |
Q |
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|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55178375 |
tgcattagagatgagactttgatatctgtttatgattatttcccccaaggaaccttagaccaaaatctacgcggttagtcctactaatatttcttctctt |
55178276 |
T |
|
| Q |
201 |
ttcacttatcattgcaact |
219 |
Q |
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|||||||||||||| |||| |
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| T |
55178275 |
ttcacttatcattgtaact |
55178257 |
T |
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