View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5541_high_5 (Length: 487)

Name: NF5541_high_5
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5541_high_5
NF5541_high_5
[»] chr1 (6 HSPs)
chr1 (1-192)||(32809553-32809751)
chr1 (346-482)||(32810666-32810802)
chr1 (207-279)||(32810527-32810599)
chr1 (6-100)||(32803005-32803102)
chr1 (144-195)||(32803243-32803294)
chr1 (144-192)||(16578604-16578652)
[»] chr6 (1 HSPs)
chr6 (391-471)||(7599000-7599078)
[»] chr5 (1 HSPs)
chr5 (144-179)||(3332399-3332434)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 32809553 - 32809751
Alignment:
Q  1 tcctagttatggacaaaatctcaatcctgtgaagtgctacaacagcaccaagagctgaaggttgtctaagagtaacattagct-----acagagccactt 95  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||    
T  32809553 tcctagttaaggacaaaatctcaatcctgtgaagtgctacaacagcaccaagagctgaaggttgtctaagagtaacattagctgctatacagagccactt 32809652  T
Q  96 ccactnnnnnnnnn--gcaccacattgacgccttcttgcgaattgtgctatgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttc 192  Q
    |||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32809653 ccactaaaaaaaaaaagcaccacattgacgccttcttgcgaattgtgctatgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttc 32809751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 346 - 482
Target Start/End: Original strand, 32810666 - 32810802
Alignment:
Q  346 ctagagttacatatatttaaaacatgatagagaactaaatgacagaggatgcttagttgaattaataaattattagtgtaaatatgctattaagtaattt 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32810666 ctagagttacatatatttaaaacatgatagagaactaaatgacagaggatgcttagttgaattaataaattattagtgtaaatatgctatttagtaattt 32810765  T
Q  446 ttatatattagttgttatttgtaattcctatgcttct 482  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  32810766 ttatatattagttattatttgtaattcctatgtttct 32810802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 32810527 - 32810599
Alignment:
Q  207 aaccttgtaagttgtaaccatttcagctactagcacactatccaacccaacaaacattgttaccggttggttg 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32810527 aaccttgtaagttgtaaccatttcagctactagcacactatccaacccaacaaacattgttaccggttggttg 32810599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 32803005 - 32803102
Alignment:
Q  6 gttatggacaaaatctcaatcctg---tgaagtgctacaacagcaccaagagctgaaggttgtctaagagtaacattagctacagagccacttccact 100  Q
    |||| |||||||||||||| ||||   |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32803005 gttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagtaacattagctacagagccacttccact 32803102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 32803243 - 32803294
Alignment:
Q  144 tgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttcgac 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32803243 tgtttttggatccaggtggtcttcctcttggtcttcggttaccaacttcgac 32803294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 16578652 - 16578604
Alignment:
Q  144 tgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttc 192  Q
    ||||||| || || |||||||||||||||||||||||||| ||||||||    
T  16578652 tgttttttgaaccgggtggtcttcctcttggtcttcggtttccaatttc 16578604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 471
Target Start/End: Complemental strand, 7599078 - 7599000
Alignment:
Q  391 aggatgcttagttgaattaataaattattagtgtaaatatgctattaagtaatttttatatattagttgttatttgtaatt 471  Q
    ||||||||||||||  | |||||||||||||| |||||||| |||| |||| |||||||||||||||||||||||||||||    
T  7599078 aggatgcttagttgtgtcaataaattattagt-taaatatgttatttagta-tttttatatattagttgttatttgtaatt 7599000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 3332399 - 3332434
Alignment:
Q  144 tgtttttggatccaggtggtcttcctcttggtcttc 179  Q
    ||||||||||||||| ||||||||||||||||||||    
T  3332399 tgtttttggatccagctggtcttcctcttggtcttc 3332434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University